Gene Avi_1245 details

Gene Information

• Locus tag: Avi_1245
• Symbol: sodB
• ID: 7387987
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 1049886
• End bp: 1050488
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643650688
• Product: superoxide dismutase
• Protein accession: YP_002548894
• Protein GI: 222147937
• COG category: [P] Inorganic ion transport and metabolism
• COG ID: [COG0605] Superoxide dismutase

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTTTCG AACTTCCCGC ACTTCCCTAC GCTTACGATG CACTCGGCCC ATTCATGTCG 
GCCGAAACGC TGGAATTCCA CCACGACAAG CATCATCAGG CCTATGTCAC CAACGGCAAT 
AATCTGCTGA AGGATTCGGG CCTTGAAGGG CTTTCGCTGG AGGAAGTCGT CAAGCAGTCC 
TATGGCAAGA ATGCCGGCCT GTTCAACAAT GCCGGCCAGC ACTACAACCA CGTGCATTTC 
TGGAACTGGT TGAAGAAAGA CGGCGGCGGC ACCAAGCTGC CTGGCAAGCT GGAAGCAGCG 
ATTGCTTCCG ATCTCGGTGG CTACGACAAG TTCAAGGCCG ATTTCATCGC CGCTGGCACC 
ACCCAGTTCG GCTCCGGCTG GGCCTGGCTC TCCGTCAAGG ACGGCAAGCT GGAAATTTCC 
AAGACCCCGA ATGGCGAAAA CCCGCTGATC CATGGCGCAT CGCCCATCCT CGGCGTCGAT 
GTCTGGGAAC ATTCCTACTA TATCGACTAC CGCAACGCCC GCCCGAAATA TCTGGAAGCC 
TTCGTGGATA GCCTGATCAA CTGGGATTAC GTGGCCGAGC TTTACGAAGC CGCCACCAAG 
TAA 

 

Protein sequence

MAFELPALPY AYDALGPFMS AETLEFHHDK HHQAYVTNGN NLLKDSGLEG LSLEEVVKQS 
YGKNAGLFNN AGQHYNHVHF WNWLKKDGGG TKLPGKLEAA IASDLGGYDK FKADFIAAGT 
TQFGSGWAWL SVKDGKLEIS KTPNGENPLI HGASPILGVD VWEHSYYIDY RNARPKYLEA 
FVDSLINWDY VAELYEAATK