Gene Avi_1161 details

Gene Information

• Locus tag: Avi_1161
• ID: 7386221
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 982186
• End bp: 984099
• Gene Length: 1914 bp
• Protein Length: 637 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 643650627
• Product: hypothetical protein
• Protein accession: YP_002548833
• Protein GI: 222147876
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.143311
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAACGT TTGATACGGC GGTCAAGGCT TATCAGGCCG GGGATTTCGA TGCGGCGCTG 
GGTGCGGCGC ACGCCGTGAT TGCCAAAAAA GCGCCCAATC ATGCGATGGC GAAGGCCTTA 
ATCGGCAATA TCCTGCTGAA ACGCGGCGAT AAGCCAGCCG CCGCCAGCGC CTTTGCCCAG 
GCGGCAAGCG CCAATCGCGC CGAGGCACCT GCCTTTCTGA AACTGGCGGC GACGCTGTTT 
CTCCAGACCG GACAGACGGA TGATGTTCGC CGGATCGGGC TAGAGGCGGG TCTGCTCAAT 
CGCAACGATC CGGCCTTTGT GCTTGTTATG GCTCAGACCC TACTGGCAGC TTGGGACGAC 
CCGGCCCGCC AGGCCGTGAC GCAACTGATC CCTTATCTTG ACCGAGCGAG CGGCCCGGCA 
ATGTTTTTTG CCGCCAGTTT CTACCGCGCC AATTGGCAGC TGCCTGAACT GAAAGCGCTG 
CTGGATGAGG CCCGTGAAAC CGTGCCTGAT GATGTCGCCA TCGAAGACCT GCGCTTTGCC 
AGCGCCCATG ATCTGGTCGA TCTCGCCACC ATTGCCCGCC ATCAGGCATT GATGGCCGCC 
CCGGACGAGC CTTACGCCCG TGCTGTGTTG CAGGTCGAGC AGGCGCTGTC GCGCTTGCTG 
TGGTGCGAAG ACCAGAGTGT GCAGGCCAAG CCCGTGCGCG AGCATCTGGC GCTGGCGCAA 
AGCTTCGCCG CCCGCCCGCC GCGGCGGAAA ATCGGCCGCC GGATAATGGA AAAGAGCGAA 
CAACCCCTGC ATATCGGCTA TCTCTCCAGC GACTTTCACG CCCATGCAAC AATGACGCTG 
TTTCTCGACA GCCTGCTAGC CCATGACCGC AGTCGGTTCA GGATCACGCT ATTTTGCTAT 
ACCGCAAAGA CCTACAGCGC CGATCAGCAG GCCATGCCGG AGCAGCTACG CCGCGAACTT 
GTCAGTCTGC GCGATCTTTC CGACGAGGAG GCGGCTGGCG AAATTGACCG TCGGAAAGTC 
GATATTCTGG TCGATCTGAA AGGCCATACG CCGGGTGCCA GGCTCGGCAT CGTCAATCTG 
TCGTCGGCGC CAGTTAAAGC AACCTATCTC GGCTTCCCCG GCCCGGTGTC CGGCGTCGAT 
CTGGATTATG CTATCACCGA TCCGGTGGTG ACGCCTGACA GTGCCGAGGC TTTTTACCAG 
GAAAAATTCT GCCGCCTGCC GGAGTGCTAT CAGGCCAACA GCGCTGCCAG CCGTCCGCAA 
CCAAGGCCGT CGCGGCGTGC CGATCATGGG GTGCCGGAGC ATGCCTTCGT TTTTGCGTCC 
TTCAACGGCG TCCATAAGAT CACGCCGCAG ACCATGTCCC TGTGGGCTAG AGTATTGCGG 
GCCGCACCCG ATAGCCTGTT GTGGATGCTT TGCCCGGATG CCATTGCAAG AACCAACCTG 
GAGGCGGCCT TTGTGGCGGA AGGCATCGAT CCGGCCCGCA TCCTGTTTGC CGCCAAGCAA 
GATTATGGCG ACCACGTCCA CCGGCTGCCG CTGGCCGATC TGGCGCTCGA TACCTTCCCC 
TGCAACGGCC ATACGACGAC CTCCGATATG CTTTGGGGCG GGCTGCCGGT CTTGACCAAA 
CGTGGGCATT GTTTTGCCGG GCGGGTGTCG GAAAGCCTGT TGAAGGCTGT CGGCCTCGAT 
CAACTGGTGG CTGATGATGA GGAGGCGTTC GTCAGTCTGG CCGCAGAGCT GGCCCGGCAA 
CCGGACAAGA TTGCCGCGTT GAAAAACCAC CTTGCCACCA GCCGCCATGC CGCGCCGCTG 
TTCGATACGC TTCGCTTCAC CCAACATCTG GAACGAGCCT ATGAGATGAT GGCGGAGCGC 
GCCCGCGCGG GCCTCGCGCC CGCCCGGATC GATGTTCCGG CCCTGCCGGG GTAA 

 

Protein sequence

MATFDTAVKA YQAGDFDAAL GAAHAVIAKK APNHAMAKAL IGNILLKRGD KPAAASAFAQ 
AASANRAEAP AFLKLAATLF LQTGQTDDVR RIGLEAGLLN RNDPAFVLVM AQTLLAAWDD 
PARQAVTQLI PYLDRASGPA MFFAASFYRA NWQLPELKAL LDEARETVPD DVAIEDLRFA 
SAHDLVDLAT IARHQALMAA PDEPYARAVL QVEQALSRLL WCEDQSVQAK PVREHLALAQ 
SFAARPPRRK IGRRIMEKSE QPLHIGYLSS DFHAHATMTL FLDSLLAHDR SRFRITLFCY 
TAKTYSADQQ AMPEQLRREL VSLRDLSDEE AAGEIDRRKV DILVDLKGHT PGARLGIVNL 
SSAPVKATYL GFPGPVSGVD LDYAITDPVV TPDSAEAFYQ EKFCRLPECY QANSAASRPQ 
PRPSRRADHG VPEHAFVFAS FNGVHKITPQ TMSLWARVLR AAPDSLLWML CPDAIARTNL 
EAAFVAEGID PARILFAAKQ DYGDHVHRLP LADLALDTFP CNGHTTTSDM LWGGLPVLTK 
RGHCFAGRVS ESLLKAVGLD QLVADDEEAF VSLAAELARQ PDKIAALKNH LATSRHAAPL 
FDTLRFTQHL ERAYEMMAER ARAGLAPARI DVPALPG