| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1144 |
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| Symbol | betA |
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| ID | 7386209 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 966004 |
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| End bp | 967659 |
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| Gene Length | 1656 bp |
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| Protein Length | 551 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643650615 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_002548821 |
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| Protein GI | 222147864 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAACC AGGCAGATTT CATCATCATC GGTTCCGGCT CGGCAGGCGC GGCCATGGCT
TACCGCCTGT CGGAGGATGG CAAGCATACA GTGATCGTGC TGGAATTTGG CGGATCAGAC
ATTGGCCCCT TTGTGCAAAT GCCTGCCGCC CTCGCCTTTC CGATGAATAT GGACCGCTAC
AATTGGGGCT ATGTCACCGA GCCGGAACCA CACCTCAACA ATCGCCGCAT GATTGCGCCG
CGTGGCAAGG TGGTGGGTGG CTCATCCTCC ATCAACGGCA TGGTCTATGT GCGCGGCCAT
GCGGAGGATT TTAACCGTTG GGACGAGCTC GGAGCGACTG GTTGGTCCTA TGCCGATGTG
CTGCCTTACT TCAAGCGCAT GGAGCATTCT CATGGCGGTG AAGAGGGCTG GCGCGGCACC
GATGGTCCCC TGCATGTACG CCGGGGCGAG GTGAAAAATC CGCTGTATCA GGCTTTTATT
GATGCAGGTC AGCAGGCCGG ATTCCCCGTC ACTGAAGATT ACAATGGCCG CCAACAGGAA
GGCTTTGGCC TGATGGAACA GACCAGCTGG CAAGGCCGCC GCTGGTCCAC CGCCAATGCC
TATCTGAAAC CGGCGCTGAA GCGCGACAAT TGCCGCCTGA TCCGCTGTTT TGCCCGCAAG
ATTGTGCTGG ACGGCCGCCG CGCTGTGGGC GTGGAAGTGG AGATTGGCGG CAAGATCGAG
GTGATCCGCG CCAACCGCGA GGTGATTGTT GCCGCCTCCG CCTTTAACTC GCCCAAACTG
CTGCTGCTGT CTGGCATTGG CCCGGCGGCA CATTTGCGCG AGATGGGCAT TGATGTGGTG
GCGGATCGGC CCGGTGTTGG CCAGAACCTG CAAGATCATC TGGAATATTA CCACCAGTTC
AAATCGAAAC TGCCCATCAC CCTGCATTCC AAAAACAACT GGTTCTGGAA AGGCGTGGTC
GGCGCGCAAT GGCTGTTGTT CAAGAAAGGC CTTGGCACCT CCAACCAGTT CGAGGCCGCC
GCCTTTATCC GCTCAAGCGC GGGCGTAAAA TGGCCCGACC TGCAATACCA CTTCCTGCCG
ATTGCCGTGT CCTATGATGG CAAATCGTCA GTGGAGGGCC ATGGTTTTCA GGCCCATGTC
GGCTATAACA TGTCGAAATC GCGTGGCTCT GTGACCTTGC GCTCACCGGA TGTCAAAGAC
GCTCCCGTAT TGCGCTTCAA CTATATGAGC GATGCGGAAG ACTGGGTGAA ATTCCGCCAT
GCCGTGCGGA TCACCCGCGA TATTTTCGCG CAAAAAGCCT TTGATCCCTA TCGGGAATCC
GAAATCGCAC CGGGATCGAA AGTGCAAACC AATGACGAGA TCGACGCCTT CCTGCGCGAA
CATCTGGAAG GCGCCTATCA CCCCTGCGGC ACAGCCAAAA TGGGCAGTAA AGATGATCCA
ATGGCCGTGG TCGATCCCAC TTGCAAGGTG ATTGGCGTCG AAGGCCTACG GGTGGCGGAT
TCATCGATTT TCCCGCATGT CACCTATGGC AATCTCAACG GCCCCTCGAT CATGACCGGC
GAAAAAGCGT CCGATCATAT TCTTGGTCGT GATCCATTGC CCCGCAGCAA TCAGGAGCCC
TGGATTAATC CAGATTGGCA GTTAAGTGAT CGGTAA
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| Protein sequence | MENQADFIII GSGSAGAAMA YRLSEDGKHT VIVLEFGGSD IGPFVQMPAA LAFPMNMDRY
NWGYVTEPEP HLNNRRMIAP RGKVVGGSSS INGMVYVRGH AEDFNRWDEL GATGWSYADV
LPYFKRMEHS HGGEEGWRGT DGPLHVRRGE VKNPLYQAFI DAGQQAGFPV TEDYNGRQQE
GFGLMEQTSW QGRRWSTANA YLKPALKRDN CRLIRCFARK IVLDGRRAVG VEVEIGGKIE
VIRANREVIV AASAFNSPKL LLLSGIGPAA HLREMGIDVV ADRPGVGQNL QDHLEYYHQF
KSKLPITLHS KNNWFWKGVV GAQWLLFKKG LGTSNQFEAA AFIRSSAGVK WPDLQYHFLP
IAVSYDGKSS VEGHGFQAHV GYNMSKSRGS VTLRSPDVKD APVLRFNYMS DAEDWVKFRH
AVRITRDIFA QKAFDPYRES EIAPGSKVQT NDEIDAFLRE HLEGAYHPCG TAKMGSKDDP
MAVVDPTCKV IGVEGLRVAD SSIFPHVTYG NLNGPSIMTG EKASDHILGR DPLPRSNQEP
WINPDWQLSD R
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