Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1062 |
Symbol | |
ID | 7387145 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 896502 |
End bp | 897398 |
Gene Length | 897 bp |
Protein Length | 298 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643650553 |
Product | ABC transporter substrate binding protein |
Protein accession | YP_002548761 |
Protein GI | 222147804 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0803] ABC-type metal ion transport system, periplasmic component/surface adhesin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.861783 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACCGTA AACTGTTATT GTCCGCAGCC CTGCCACTGC TGATGGTGCT GTCTACCGCA CCAGCCTTTG CCGACACACT GAAGGTTGTC GCGTCCTTCA CTGTGTTGGC CGATGTCGTC AAACAGGTTG GCGGCGATCA TGTCACCGTC TCCAGCCTGG TTGGCCCCGA TGGCGACCCC CATGAATTCG AGCCGTCGCC AGCCAATGCC AAGGCTCTGA AGGCCGCCGA TGTGACATTC GTGTCCGGTG AAGGCCTGGA AGGCTGGATG GACCGGCTGA TCACCGCCTC CGGCTACAAG GGCAAGCCGG TCGTCGCTTC CGAGGGCATC AACACCCGCA CCATGGAAGA GGATGGCAAG ACCGTGACCG ATCCGCATGT GTGGAACAGC CCGGTCAATG TGAAGGTCTG GGTCGCCAAT ATCGAAAAGG CGCTGACTGC TGCCGATCCC GCCGATGCCG AAGCCTTCAA GGCCAATGCG AGCGCCTACA CGAAAAAGCT TGAAGACATG AATGCCTATG CTCATGCCAA GTTTGACAAC ATCCCTGAAT CGGAGCGCAA GATCCTCACC AGCCACGACG CCTTCGGGTA TCTGGGCCGC GAATACAAAA TCAGCTTCCT GTCGCCACTC GGTCTTTCCA CCGAAAGCGA AGCCTCTGCC GCCGATGTCG CCAAACTGAT CGAGCAGATC AAGACCGAGC ATGTGAAGAG CTATTTCTTC GAAAACTCCA ACGATCCGCG TCTCGTCAAG CAGATCGCCA AGGCAACCGG CGCGACATCC GGGGGTGAGC TTTATGTGGA AGCTCTGTCC AAGCCCAAGG GCCCGGCTTC GAGCTATGAG AAAATGTTCC GCTACAATGT CGACAAGCTG GCCGATGCCA TGCGCAAATC AAGCTGA
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Protein sequence | MNRKLLLSAA LPLLMVLSTA PAFADTLKVV ASFTVLADVV KQVGGDHVTV SSLVGPDGDP HEFEPSPANA KALKAADVTF VSGEGLEGWM DRLITASGYK GKPVVASEGI NTRTMEEDGK TVTDPHVWNS PVNVKVWVAN IEKALTAADP ADAEAFKANA SAYTKKLEDM NAYAHAKFDN IPESERKILT SHDAFGYLGR EYKISFLSPL GLSTESEASA ADVAKLIEQI KTEHVKSYFF ENSNDPRLVK QIAKATGATS GGELYVEALS KPKGPASSYE KMFRYNVDKL ADAMRKSS
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