Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1053 |
Symbol | |
ID | 7387137 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 889159 |
End bp | 890046 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 643650545 |
Product | beta-lactamase class D |
Protein accession | YP_002548753 |
Protein GI | 222147796 |
COG category | [V] Defense mechanisms |
COG ID | [COG2602] Beta-lactamase class D |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.110026 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGCCGA TATTTTCCGA TTGCCATGGT AATCCCGCGA CAATAGCGGA CTTTCGTCGC AATCGAGAAG AGGAACAGGC TGTGAAATTA GGGCAAATCG CGCTGACACT GATCGCAGCC AGCTTTTTAG CGTCCACGGC GCAGGCTGGA ACGATTTGCA CGGTCATTGC CGATAGCAAA ACCGGGAAGA CCTTGGTCCA GGACGGCAAT TGTGCGGAGC GTGTCACGCC CGCTTCCACC TTCAAGGTCG CCCTCAGCGT GATAGGCTAT GATGCCACTT ACCTGAAGGA CGAGCATAAT CCGACCCTGC CGTTTAAACA GGGTTATGTG GATTGGGGCG GCGACAATTG GAAACAGCCG ACCGATCCGG TGCGCTGGAT GAAATACTCC GTCGTCTGGT ATTCCCAGCA GATCACCAGG ACGCTTGGGC AAGACAAGCT TCGTGATTAT GCGACGAAAT TTGCCTATGG CAATGCCGAT TTTTCCGGCG ATCCTGGCAA AAACAATGGT CTGGAGCGGG CATGGATTGC CTCCTCCTTG AAGATTTCGC CGCTGGAACA GGTCGCCTTC CTAAGAAAGC TGGTCCAGCA TCAGCTGCCC GTTCGCCCCG AAGCCATGGA CAAGACACTG GCCATCGTTG AGCAACGCCA GATCGCCGAT GGCTGGACCG TGCACGGTAA AACCGGCGCG GCCTTCCCTC GTCTTTCGGA CACCGCGTTC GATTATAGCC GTGGATGGGG CTGGTATGTC GGCTGGGCCA GCAAAGGCAA ACAGACCTAT GTGTTTGCCC GTCTCATTCA GGATGAGAAA AAAGACCAGA TCACCCCTGG GGGTCGGGCG CGCGACGCTT TGCTGGAAGA ACTGCCAGAG TTGCTGGCCA GCAAGTGA
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Protein sequence | MLPIFSDCHG NPATIADFRR NREEEQAVKL GQIALTLIAA SFLASTAQAG TICTVIADSK TGKTLVQDGN CAERVTPAST FKVALSVIGY DATYLKDEHN PTLPFKQGYV DWGGDNWKQP TDPVRWMKYS VVWYSQQITR TLGQDKLRDY ATKFAYGNAD FSGDPGKNNG LERAWIASSL KISPLEQVAF LRKLVQHQLP VRPEAMDKTL AIVEQRQIAD GWTVHGKTGA AFPRLSDTAF DYSRGWGWYV GWASKGKQTY VFARLIQDEK KDQITPGGRA RDALLEELPE LLASK
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