Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1052 |
Symbol | ispH |
ID | 7387136 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 888097 |
End bp | 889131 |
Gene Length | 1035 bp |
Protein Length | 344 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643650544 |
Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
Protein accession | YP_002548752 |
Protein GI | 222147795 |
COG category | [I] Lipid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0761] Penicillin tolerance protein |
TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.308304 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGACTG CAATGGACAA AACGCTTTTG GAAACCGGCT CGGTAACCCG GTCGCCATTG ACGATCCGGC TGTGCGGTCC GCGCGGTTTT TGCGCCGGTG TCGACCGGGC GATCCAGATC GTCGTGCTGG CGCTGAAGGG CTATGGCGCG CCGGTCTATG TCCGTCATGA AATCGTCCAC AACCGCTATG TGGTTGAGGG GCTGGAGGCC AAGGGGGCTG TCTTCGTCGA GGAACTGGAT GAAATCCCGG TCGAGCATCG CCAGCAACCT GTGGTGTTTT CCGCCCATGG CGTGCCGAAA TCCGTGCCGG AAGATGCGCA GAAGCGCAAT CTCTTCTACC TCGATGCCAC CTGTCCGCTG GTCTCGAAAG TCCATAAACA GGCCATGCGC CATCAACGGC TTGGCCGCCA TGTCATCCTG ATTGGTCACG CAGGCCACCC GGAAGTAATC GGCACCATGG GGCAATTGCC CGAAGGCACC GTTTCCCTGG TGGAAACCGT TGAGGATGCC GCCGTCTATC AGCCAATCGA TCCCGAAAAC CTCGGCTTCG TCACCCAGAC CACGCTGTCG GTGGATGATA CCGCAGGCGT GATTGCCAAA TTGCAGGAGC GCTTTCCAGA GCTGAAGGCA CCTGCTGCCG ACAGTATTTG CTATGCCACC ACCAACAGGC AGGAAGCGGT GAAACAGGCA GCGCCCGGCT GCGACCTGTT CGTCACCGTC GGCGCTCCCA ATTCATCCAA TTCCAAGCGG CTGGTGGAAG TGGCGTTGAA AGCTGGCGCC AAGCGCTCCA TCCTGGTGCA GCGCGCCAGC GAGTTGGACT GGGACGCCAT CGGTGAGATC CGCAGCCTTG GCCTGTCGGC GGGCGCATCG GCACCGGAAG TGGTGGTCAA CGAAATCATC GAGGCCTTCA AGGCCCGCTT CGACGCGACA ATCGAGCTGG CTGAATTTTC GATTGAGAAC GAAAACTTCC TGGTCAACCG CGAATTGCGC TCCATCGAAC TGACCCAGGA CGACATGGCC TTCGTCAACG GGTGA
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Protein sequence | MTTAMDKTLL ETGSVTRSPL TIRLCGPRGF CAGVDRAIQI VVLALKGYGA PVYVRHEIVH NRYVVEGLEA KGAVFVEELD EIPVEHRQQP VVFSAHGVPK SVPEDAQKRN LFYLDATCPL VSKVHKQAMR HQRLGRHVIL IGHAGHPEVI GTMGQLPEGT VSLVETVEDA AVYQPIDPEN LGFVTQTTLS VDDTAGVIAK LQERFPELKA PAADSICYAT TNRQEAVKQA APGCDLFVTV GAPNSSNSKR LVEVALKAGA KRSILVQRAS ELDWDAIGEI RSLGLSAGAS APEVVVNEII EAFKARFDAT IELAEFSIEN ENFLVNRELR SIELTQDDMA FVNG
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