Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1017 |
Symbol | |
ID | 7387110 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 861836 |
End bp | 864991 |
Gene Length | 3156 bp |
Protein Length | 1051 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643650518 |
Product | GGDEF family protein |
Protein accession | YP_002548726 |
Protein GI | 222147769 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTCGGT ATAATGTGTA TGGCAGGATA ATGACAGAAT TCGTAAATCC CGCCGATCTC CAAACACGCC GTTCCAGCAA TGTGGCGATG GCGTTATTGG CCCTGGCGTT TGTCCTGCTG ACAAGCCTGC TTGCCTATAT CGGTTATCTC AATATCACCG ACTACCGCGG CCAATTGCGC AGGCAAGTCC AAGCGGACCT GCAGCGGGTC AGCGGGATGA TGACCCAAAG AACCGAGGAG AATTTCTTCG CGCTTCGGCA TCTTGTCCAT GCATTGTCAC CGCTTGAAGG CGCTTTGGCC TCGCCACAAA CGGAGGGGCT TGTTCGCGGT ATTCTAAGGG AACGTCCGGA ATTTCGAGCT TTGGCGCTGG CCCGCGGCAC TGTCATAGAA CAGGTGTGGA CGCAGCAAGG GCTCTCCCCC CGGACCAGCA TGACGATCGG TTCGGATTCG GACACGGATA TGCTATTGCT GGATGACGGG CAATTGCAAC TGGATCTCAC CGCCGCCGAT GTGACGCCCT CCCCTATCCA TGTCCGTGCC ATTCTGGATA CCGCCAAATT CATCCAGTCC GCCATCGCCG ATGGCGCCAC CGCTCCGGTC GGCAACGGAC CGGCTATCGA GATTGCCGTC ATGGTGCAGA CCGCATCCGG TACGCGCACT GTTTTTGGTA GCCCGTCGCT CGCGACTGAG GATTTGGCCA GGCCGGATTT GGTCAAGCAG AACATCACCG GGGAAAACCC GGAAATACTG ACCATGGCGC TTCAAGGCGG GACGCTGCAA GTGTATGGCC GCCCCCGGGC AGGCTGGCAG CAGAAGCCGC AGGATCACAG TAATTTCGTC ATGACGCTGG TTGCCGTGGA TCTGGCTTTT GCAGCACCGC TTTGCGGCAT AGCAATGCTT TTCATCTCCC GTGCCAAACG CCGGCGTGCG CTCCAGCAGA TGGAAGACAA GTACCGGGCC TTGACCCGGC GTTTCGAACT GGCAATGGAC AGTTCCAATA TCGGCATGTG GGAACTTGCA ACCGGCAATC CGACCCTCCA TCAAGACAGC CGTGCCGCAC AATTGCATGG ATCAGGCAGC GGCGGCGATC TCGATCAGGA CATGACCCGC TGGTTGGAAA CCGTGCATCC GGAAGACCGC GCCAAGGCGA AAGCCCATGT TATGGCCTGC CAGCAAGGCG AAAACAGCCA GGATTACCGG GTCGTGCTGG AGAGCGGCGT GATCCGCACC TTGCGCTCCG TCGGCAGCCA TGCGGATGCC TCCGGGCATA ACCGGGTGAC GGGTCTCGTC TGGGACATTA CTGCCGATGT CGCCATGCAA AATGACCTCC GAGCTGCCAA GGAGAGCTCA GACATCAAGA ATGCGGAGCT GGAACTGGCC CTGGACGAGT TGTCCATCCG AGAGCAGCAG TTGGAAAGCC TGTCCTATCG GTTTGAACTG GCGCTGGATT CCTATGGCTG CGGCGTCTGG GAACATGATT TTTCCACAGG CCACACCGTC TGGGACGAAC GCATGTGCTA TCTCTATAAT ATTCCGGCCA CCAGCAGTCA TATCACCGAC GCATTGTGGC TGAGCAAGAT CCATAAAGAC GACCACGAAA TGTTGATGGA GGCCGCACGC AACGCGGTAA AGCAGCATAC GCGCCTCAAC ACCAGCCAGC GGGTATTGTT GGACCAGGGC GGCACACGCT GGGTGCGCTC CGTTGGTCAG GTGCATGTCG ACCGTAACGG ACGCAAAAAG CTGATCGGCA TCAGCTTCGA TGTGACGGCC GACGTGCTGC TGACAGAAGA ATTGCGCACG GCGAAGGCCG AGGCGGAAGC GCGCAATATC GAGCTTGAAC TGACCAAGAA CCGGATCGAA TTCAATGCCT TGCATGATCC ACTGACCGGC CTTGCCAATC GTCGCAAGCT GGATATCGCC CTGGATAGCC TGACGCGGCA GTCCCAGGCA AACAGAAGCC GCTTCACCAT TCTGCATCTC GATCTGGATC GGTTCAAGGA AATCAACGAC ACGCTGGGCC ATGCCGCTGG CGATGCCATG CTGGTCAATG CGGCACGGGT TCTGTCACGC CACATGAACA GCGGCGATCT GGTGGCGCGG ATTGGCGGAG ACGAATTCGT CGTTCTCCTG CATGGGCCAA TCGATGCCAA GGCCGCCGCC GAGCTTGCCG AACGCATCAT CCAGGACATC AACATACCCG TGGATTTCGA GGGCTTCATC TGTCGCTGCG GCGTTTCCAT CGGCATTGCC GAGGCCAAGG GACTGCGAAC CGATGCCCGC AAGATCCTGA TCAATGCCGA TCTGGCGCTT TACGAGGCCA AGCGGCAGGG CCGCAACTGT TTCCAATTCT TCACGGACAA TCTCCAGGCC AATATTGTCA GTTCGAAGCG CATTGCCGAC GAATTGCTGC ATGCCCTTGA AAATGACGAG ATCACCGCCT GGTACCAGCC GCAATTCTGC GCCAACAGCA TGGAACTGGT CGGCGCCGAG GCGCTGGTCC GCTGGCAGCA TCCAACCCGC GGCATCCTGC CCAGCAACAG CTTCCTGAAA GTGGCGGAAG ACCTGAATGT CATGGCGCGG ATCGACCAGA TCGTGCTGGA ACTGGCGTTG AAGGACAAGA TGCGATGGGC CGCCATGGGG GTGAAACTGC CCAAGATTTC CGTCAATGTC TCTTCCCGCC GCCTGCATGA TGCCGGGCTG ATCGAGACGC TGGAAAGTCT CAGCATTTCA CCCGGCGAAA TTTCCTTCGA ACTGGTCGAA TCGATCTTTC TCGATGAAAG CGAGGATATT GCCACCACCA ATATCGAGCG GATCAAGGCG CTGGGCATCG ACATCGAGAT CGACGACTTC GGCACGGGCC ACACCTCGAT CATCAGCCTT TTGAAACTGC AACCCAAGCG GCTGAAGATC GACCGGCAAT TGGTGATGCC CCTGCTCAAT TCCAGCCGGG AACGGGCCAT GGTGCGCTCG ATCATCGACA TCGCCCGCTC TCTTGGAGTG GCAACCGTGG CCGAGGGCGT CGAAAGCACC GCCCATGCCC AGATCCTGCG CGAATTGGGC TGCGACCTCT TGCAAGGCTA CGCTTTTGCA AAACCACTCC CCTTCGAGGA ATTCGGCCGT TTCGCCTTGC AGACAGACCG CCAGATGGCG TCATAA
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Protein sequence | MPRYNVYGRI MTEFVNPADL QTRRSSNVAM ALLALAFVLL TSLLAYIGYL NITDYRGQLR RQVQADLQRV SGMMTQRTEE NFFALRHLVH ALSPLEGALA SPQTEGLVRG ILRERPEFRA LALARGTVIE QVWTQQGLSP RTSMTIGSDS DTDMLLLDDG QLQLDLTAAD VTPSPIHVRA ILDTAKFIQS AIADGATAPV GNGPAIEIAV MVQTASGTRT VFGSPSLATE DLARPDLVKQ NITGENPEIL TMALQGGTLQ VYGRPRAGWQ QKPQDHSNFV MTLVAVDLAF AAPLCGIAML FISRAKRRRA LQQMEDKYRA LTRRFELAMD SSNIGMWELA TGNPTLHQDS RAAQLHGSGS GGDLDQDMTR WLETVHPEDR AKAKAHVMAC QQGENSQDYR VVLESGVIRT LRSVGSHADA SGHNRVTGLV WDITADVAMQ NDLRAAKESS DIKNAELELA LDELSIREQQ LESLSYRFEL ALDSYGCGVW EHDFSTGHTV WDERMCYLYN IPATSSHITD ALWLSKIHKD DHEMLMEAAR NAVKQHTRLN TSQRVLLDQG GTRWVRSVGQ VHVDRNGRKK LIGISFDVTA DVLLTEELRT AKAEAEARNI ELELTKNRIE FNALHDPLTG LANRRKLDIA LDSLTRQSQA NRSRFTILHL DLDRFKEIND TLGHAAGDAM LVNAARVLSR HMNSGDLVAR IGGDEFVVLL HGPIDAKAAA ELAERIIQDI NIPVDFEGFI CRCGVSIGIA EAKGLRTDAR KILINADLAL YEAKRQGRNC FQFFTDNLQA NIVSSKRIAD ELLHALENDE ITAWYQPQFC ANSMELVGAE ALVRWQHPTR GILPSNSFLK VAEDLNVMAR IDQIVLELAL KDKMRWAAMG VKLPKISVNV SSRRLHDAGL IETLESLSIS PGEISFELVE SIFLDESEDI ATTNIERIKA LGIDIEIDDF GTGHTSIISL LKLQPKRLKI DRQLVMPLLN SSRERAMVRS IIDIARSLGV ATVAEGVEST AHAQILRELG CDLLQGYAFA KPLPFEEFGR FALQTDRQMA S
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