| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0620 |
|---|
| Symbol | |
|---|
| ID | 7388673 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 538015 |
|---|
| End bp | 541524 |
|---|
| Gene Length | 3510 bp |
|---|
| Protein Length | 1169 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643650235 |
|---|
| Product | two component sensor kinase/response regulator hybrid |
|---|
| Protein accession | YP_002548447 |
|---|
| Protein GI | 222147490 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTCCGG CATGGCTGAT CATCACGGCA TCGATTGCCT ATCTGCTGCT GCTGTTTGCG
GTGGCAAGCT ATGGCGACAG GCGAAGCCGC CGCAATGGCG TGCCCGCCGG TGGGCGTCCG
CTTGTCTATG GGCTGTCGCT GGCGGTCTAT TGCACCTCAT GGACCTATTT CGGCGGCGTC
GGCCTGGCTG CGGACCGCGG CCTCGAATTC ATGGGCATCT ATATCGGCCC GATCCTGATG
CTGACATTGG GCCTGCCGCT GATCCGCCGG ATGATCGAGA TCGCCAAGGT CGAAAAGCTG
ACCTCCGGCG CTGATTTCGT TGCTGCCCGC TATGGCAAGA ACCCAATTGT CGGCATGCTG
GTAACGGTGA TTTCGCTGGC AGGCTCCATT CCCTATATCG CTCTTCAACT GAAGGCCGTC
TCCAATTCGG TCAGCGTCAT GGTCGATCCG GCCAGCTATG GCATCGGCAC CGGCAATCTC
TATTTCGTCG ATCTGGCGCT GATCGTTGCC CTGACGCTTG CCTGTTTTTC CGCGATTTTC
GGCACGCGCC ATACGGACGC CACTGAGCAT CAGGATGGGT TGATCCTGGC GATCTCGATG
GAATCGGTGG TCAAGCTGCT GGCCTTTTGC ACGCTGGGCA TCACGGTGGT GTTCTTCTTG
TTCGATGGAC CGGCGGATCT CTGGCGCGCG GCCACCGAAA GCCCGAGGGT GATGGAGGCG
CTGGCCTATG AGACACCCCT TAGCCGCTGG CTGCTGTTGA TTGCGCTTTC GGCCTTCGCC
ATATTGATGC TGCCGCGCCA GTTCCATGTC AGCGTGGTCG AAAACCGCAC GGATCGGGAA
CTGCGCCGGG CCGGACTGCT GCTGCCGCTT TATCTGATCG CCATCAATCT CTTCGTGCTG
CCAGCTGCCA TTGGCGGGCT TCTGGCTTTC AAAGGCACCG GCAATGCCGA TCTCTATGTG
CTTTCCCTGC CGCTGACCCA TGATCTGCCA TTTGTCACGC TGGTCACCTT CATCGGCGGT
TTTTCCGCCG CCACTGCCAT GGTGATCGTC GAAACGGTGG CGCTGGCCAT CATGATTTCC
AACGACATCG TCCTGCCGGT TCTGCTGCGA CGCGGGTTCC GGCATGGGCC TGAGGCCTCA
CAAAGTCTGG CCAAGACCGT GCTTCTCATT CGCCGCCTGG CGATTTTCGG GGTGTTGCTG
CTCGGCTATG CCTATTTCCG GCTGGCCAGC GATGACAGGG GCCTTGCCTC CATCGGTCTG
CTGGCCTTTG CCGCCATTGC CCAGATTGCC CCTTGCCTAC TGGGCGGGCT TATCTGGCGC
AGGGCCAATG CGCGGGGCGC AATCCTTGGC CTGTCGCTTG GCTTTCTCAC CTGGATCTAT
ACGCTGCTTT TGCCGAGCTT CGGGCTTGAT GCCCATAAGG ATCTGGCCCC GGATATCCTG
TCCTTCCTGT TTCCGGGTGT TGATGCCTTC AGCCGGGCCG GGGCCGATCC GCTGCTGACG
GCGACCGTAC TGTCCCTGCT GATCAACCTA TTGGCCTTTG TGCTTGGCAG CCTCAGCCGC
AACCCACGCC CGGTCGAGCG CATCCAGTCG GGCATATTCG TGCGTCGGCA CCAACGTTCG
CAATTTGCCA CCAGGGGCTG GAAAACCCGG GTCAGCATCG GCGACCTGAA GACAGCGATT
GCCCGTTATC TCGGCCAGGA ACGGATGGAA CGCTCACTGA AAAGCTATGA GCGCGATGCC
GGACGCCGGT TGGAAGACGA TAGTCCCGCC GACATGGCTT TCATCCATTT CACCGAGCAA
TTGCTGGGTA GCGCCATCGG CTCGGCCTCG GCCCGGCTGG TCCTGTCGCT GGTGCTGCAA
AAGGCCGAGG ATACGTCCGC CGACACCGCC TGGCTGCTCG ATCAAGCAAG CGAGGCTCTG
CACTATAACC AGGATATGCT GCAAACCGCG CTTTCGCAGA TGGATCAAGG CATTGCGGTC
TTCGACAGCA GTAGCCGATT GACGATCTGG AACCGGCGGT TTCGAAGCCT TCTCGATCTG
CCCGACGAAA TGGGTCAGGT CGGCGTGCCA CTCAGCACGA TAGTCCATCG GCTGACCGAG
CGCGGCGCCA TTGCGGCCAA GGAGGAAGCG GGCGTTCTTG CCAATTTCCA CCATCTCGAT
GAACCCTTCC AGCTGGTGTT GAGCGAGGGT GCCCAGATCA TCGAAGTGCG CTGCAACGCC
CTGCCCGACA AGGGGTTGGT GGCAACCTTC ACCGACATTA CCCCGCAGGT GGCAGCGGAC
CGGGCTTTGA AACAGGCCAA TGAAACGCTG GAACAGCGGG TGGGCGAGCG CACGGCAGAA
CTGATGCGGG TCAATACAGC ACTTGCAGAG GCTCGCGCCA GTGCAGACGA GGCCAATATC
GGCAAGACCC GGTTCTTTGC CGCCGCCGGT CACGACATTC TCCAGCCGCT CAATGCCGCA
AGGCTCTATT CCTCGGCGCT GGTGGAGCGG TTGGGCCAGT CGGAAAATGC CGGACTGGTC
CGCAATATCG ATTCGGCACT GGAATCGGTC GAACAGATTC TTGGCGCGGT GCTGGACCTG
TCCCGCTTGG ATACAGGCGC AATGAAGCCG CGTTTTGCCA CCGTCCCCCT GCAAGGCCTG
CTGGAGCGGA TCAGGACCGA TTTCGAGCCG ATGGCGCTGG AGAAAAACCT GAAACTGGTG
GTGCTGCCGA CCACGCTCAG CGTCCGCTCC GATGCCAACC TTCTGCGTCG GCTGGTGCAG
AATCTGGTCT CCAACGCCAT CAAATATACA CCCTCCGGCA AGGTCCTGGT TGGTGCGCGC
CGCCGTGGCG GCCAGGTGAT CATTCAGGTG ACGGATTCGG GCATCGGCAT TCCGACATCG
AAATTCCGCA CTGTGTTCAA GGAATTTGCC CGGCTGGATG AAGGCATCAA AACCGCCAGC
GGGCTTGGGC TGGGCCTGTC GATTGTCGAT CGTATCGCCC GGGTCCTCAA AGCGACGGTA
GCGCTGGAAT CCCGGCCGGG CCGAGGCACC AGCTTTCGCG TCACCATGCC GTTCGAAAAG
AGCGCCAAGG CGCCGTTGCC CGTTGAGGAT TTGGCGACCG CGACCGCGCT GCGGAGCAGT
CTTAACGGCC TGCGCATCCT GTGCATCGAC AATGAGCCGG ATATTCTGGA AGGCATGCGG
CTGCTGATCA GCGGCTGGGG CTGTGCGGTG ATGACCGCAG GCTCGGTCAC CGATCTCGAC
ACGACCTTCA GCGACAATCC CGTGGCACCG GACGTTATCA TCGCCGATTA TCATCTGGGA
GATGGCAGCG GCATCGGCGC GATTCTGCGC CTACGCGCGC TCTACGGTCA GCCGGTACCC
GGCCTGCTGA TCACCGCTGA CCGCACCGCC GACGTGCGGG CGGAGGCTGA ACGGCAGGGC
ATTGCCGTAC AGCATAAGCC CGTCCGTCCA GCGGCTTTGC GGGCCTATAT TACCCAGGTC
TCCAGCCCGC GCCGCAGCGC TGCGGAATAG
|
|---|
| Protein sequence | MLPAWLIITA SIAYLLLLFA VASYGDRRSR RNGVPAGGRP LVYGLSLAVY CTSWTYFGGV
GLAADRGLEF MGIYIGPILM LTLGLPLIRR MIEIAKVEKL TSGADFVAAR YGKNPIVGML
VTVISLAGSI PYIALQLKAV SNSVSVMVDP ASYGIGTGNL YFVDLALIVA LTLACFSAIF
GTRHTDATEH QDGLILAISM ESVVKLLAFC TLGITVVFFL FDGPADLWRA ATESPRVMEA
LAYETPLSRW LLLIALSAFA ILMLPRQFHV SVVENRTDRE LRRAGLLLPL YLIAINLFVL
PAAIGGLLAF KGTGNADLYV LSLPLTHDLP FVTLVTFIGG FSAATAMVIV ETVALAIMIS
NDIVLPVLLR RGFRHGPEAS QSLAKTVLLI RRLAIFGVLL LGYAYFRLAS DDRGLASIGL
LAFAAIAQIA PCLLGGLIWR RANARGAILG LSLGFLTWIY TLLLPSFGLD AHKDLAPDIL
SFLFPGVDAF SRAGADPLLT ATVLSLLINL LAFVLGSLSR NPRPVERIQS GIFVRRHQRS
QFATRGWKTR VSIGDLKTAI ARYLGQERME RSLKSYERDA GRRLEDDSPA DMAFIHFTEQ
LLGSAIGSAS ARLVLSLVLQ KAEDTSADTA WLLDQASEAL HYNQDMLQTA LSQMDQGIAV
FDSSSRLTIW NRRFRSLLDL PDEMGQVGVP LSTIVHRLTE RGAIAAKEEA GVLANFHHLD
EPFQLVLSEG AQIIEVRCNA LPDKGLVATF TDITPQVAAD RALKQANETL EQRVGERTAE
LMRVNTALAE ARASADEANI GKTRFFAAAG HDILQPLNAA RLYSSALVER LGQSENAGLV
RNIDSALESV EQILGAVLDL SRLDTGAMKP RFATVPLQGL LERIRTDFEP MALEKNLKLV
VLPTTLSVRS DANLLRRLVQ NLVSNAIKYT PSGKVLVGAR RRGGQVIIQV TDSGIGIPTS
KFRTVFKEFA RLDEGIKTAS GLGLGLSIVD RIARVLKATV ALESRPGRGT SFRVTMPFEK
SAKAPLPVED LATATALRSS LNGLRILCID NEPDILEGMR LLISGWGCAV MTAGSVTDLD
TTFSDNPVAP DVIIADYHLG DGSGIGAILR LRALYGQPVP GLLITADRTA DVRAEAERQG
IAVQHKPVRP AALRAYITQV SSPRRSAAE
|
|---|
| |