Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0561 |
Symbol | |
ID | 7388964 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 476132 |
End bp | 476833 |
Gene Length | 702 bp |
Protein Length | 233 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 643650192 |
Product | transposase protein |
Protein accession | YP_002548404 |
Protein GI | 222147447 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3316] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGACAC CCGATATCAG TTTCAAGCGT CACCGTTTTG CGCCGCAGAT CGTTTCTCAA GCGGTTTGGC TTTACATGCG GTTCAACCTG AGCCTTCGTG AAGTTGAGGA AATGCTACTC GAGCGTGGGA TAGATCTTTC ATATGAGTCG ATCCGCCGTT GGATCGCCAA GTTCGGACCC CATATCGCCC GCAACTTGCT CAGACGGCAG GCCCGCCCCG GCGATGTTTG GCATCTGGAC GAGGTTGTTG TGAAGTGCGC TGGAGAGAAG TTCTGGCTCT GGCGCGCAGT CGATCAGCAT GGCACCGTTC TCGAAGAAAT AGTACAGAAG CGGCGTGACA AAAGGGCAGC CAAGCGCCTG CTCGTGGCGT CGATGAAGCG CTATGGCTTT GTTCCCAAGC GGATCATCAC TGATAAGCTG TGCTCCTACG GTGCGGCAAA GGCGGATGTG GCTCCCGGCC TTAACCGTTG GTCGCACAAG GGGCTCAACA ATCGGGCCGA GAACAGCCAT CTGCCGTTTC GAAAACGAGA ACGAACCATG CAGGGCCACC GATCGCCAGG AGCGTTGCAA CGGTTCGTTG CCATGCACTC AGCCACCCGC AATTGCTTTT TTGTTCCCTC CCGCCGCCGC GCCGCACAAA CAATTCGCTA CCATCGCCTC GAAGCGTTTG ATGCATGGAA AATTGCTGCC TGCATCGCTT AA
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Protein sequence | MQTPDISFKR HRFAPQIVSQ AVWLYMRFNL SLREVEEMLL ERGIDLSYES IRRWIAKFGP HIARNLLRRQ ARPGDVWHLD EVVVKCAGEK FWLWRAVDQH GTVLEEIVQK RRDKRAAKRL LVASMKRYGF VPKRIITDKL CSYGAAKADV APGLNRWSHK GLNNRAENSH LPFRKRERTM QGHRSPGALQ RFVAMHSATR NCFFVPSRRR AAQTIRYHRL EAFDAWKIAA CIA
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