| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0535 |
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| Symbol | fadD |
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| ID | 7388941 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 453416 |
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| End bp | 455116 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643650169 |
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| Product | Long-chain-fatty-acid--CoA ligase |
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| Protein accession | YP_002548382 |
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| Protein GI | 222147425 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATACTC TGTCCAGGCC TGAAAGCAAT TTTGCATCTC GCCGAATTTG GCTTGCATCC
TATCCTGCCT CGGTGCCTGC GGAACTGCCG CCCCTTGATC ACGAATCGCT GCCTGAACTC
TTCGATGAAA ACTGCGTGAC CTACGCGTCC CGCAAGGCCT TCACCAGCAT GGGCCGCTCC
ATGACCTTCC AGGAGCTTGG CGAGCAGGCG ACGAAAATTG CCGCCTGGCT GCAAGCGGAA
GGGTTCAGCA AAGGCGACCG GATCGCCGTG ATGATGCCCA ATGTCTTGCA AAACCCGGTT
ATTGTGTTTG GCATCCTCAA GGCTGGAATG ATCGTCGTCA ATGTCAATCC GCTCTATACT
CCGCGCGAAC TGGCGCATCA GCTGAAGGAT TCCGGCGCGG TTGCCATTTT CGTGCTGGAG
AATTTTGCCC ACACGGTCCA GGCGGTGATG GACAAGGTGT CGCTACGCCG CGTGGTCGTT
ACCAGCATGG GCGACATGCT TGGCCTGAAG GGCCATCTGG TGAATTTCAT CGTTCGCAAG
GTGAAGAAGC TCGTGCCAGC CTGGTCGATT GCCAATTCCC GAAGCTTCGC ATCGGTGCTC
GCGGCAGGTG GAAAAGCCCG ACTGCGGCCT GAAACCCTTT CGCGCAACGA TATCGCCTTT
CTGCAATATA CAGGCGGTAC GACAGGGGTT TCCAAGGGGG CGGTGCTGAC CCACGGCAAC
CTGATCGCCA ATACCATGCA GATGTCGCTG TGGTTGGGGT CCGCTTTCGA TACGCGCCCA
AGACCGGAAA CGCTGACCTT CATCTGCGCT TTGCCGCTCT ATCATATCTT TGCGCTGACC
GTGAACGCCC TGATGGGCAT TGCCTGCGGC GGCCACAACA TTCTGATCGC CAATCCGCGT
GACATTCCAG GCTTTGCCAA GGAACTGTCC CGGTATGATT TCAATGTCAT CATCGGCTTG
AATACGCTGT TCAATGCTCT GATGAACAAT GAGGCCTTCC GCAAGCTGGA CTTTTCCCAT
CTGCAACTGA CCTTTGCCGG TGGCATGTCG GTGCAGCGGC CGATTGCCGA ACGGTGGCAT
CAGATTACCG GCTGCCCGAT CACCGAGGGT TACGGCCTGT CTGAAACATC GCCGGTGGCA
ACCGCCAATC GCATGAACGA CAAGGACTTC AGCGGCTGCA TCGGCATGCC GATTTCCTCC
ACCGATGTCG ACATCCGTGA TGAACAGGGC GAAAGCCTGG CTTTAGGAGA AGTCGGGGAA
ATCTGCATTC GCGGACCGCA GGTCATGGCC GGCTACTGGC AACGACCGGA AGAAACGGCG
CGGGCGATAA GTGAGGACGG GTTTTTCCGC ACCGGTGACA TGGGCTTCAT GGACGCGCGC
GGCTATACCA AGATTGTCGA CCGCAAGAAG GATATGATCC TGGTCTCCGG CTTCAATGTC
TATCCCAACG AGATCGAGGA AGTCGCGGTC ATGCATCCCG GCGTGCTGGA GGCCGCGGCT
ATCGGTGTGC CGGACCCGCA TTCCGGTGAA GCCGTCAAAC TGTTTGTGGT GCGCAAAGAC
CCAAGCTTGA CGGAGCAGCA GGTTAAGGAC CATTGCGCCA CAAACCTGAC CAATTACAAG
CGTCCCCGCC ATGTGGCCTT TCTTGAAGAG CTGCCGAAAT CCAACGTCGG CAAGATTCTG
CGCAAGGATC TGAGACCTTA A
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| Protein sequence | MNTLSRPESN FASRRIWLAS YPASVPAELP PLDHESLPEL FDENCVTYAS RKAFTSMGRS
MTFQELGEQA TKIAAWLQAE GFSKGDRIAV MMPNVLQNPV IVFGILKAGM IVVNVNPLYT
PRELAHQLKD SGAVAIFVLE NFAHTVQAVM DKVSLRRVVV TSMGDMLGLK GHLVNFIVRK
VKKLVPAWSI ANSRSFASVL AAGGKARLRP ETLSRNDIAF LQYTGGTTGV SKGAVLTHGN
LIANTMQMSL WLGSAFDTRP RPETLTFICA LPLYHIFALT VNALMGIACG GHNILIANPR
DIPGFAKELS RYDFNVIIGL NTLFNALMNN EAFRKLDFSH LQLTFAGGMS VQRPIAERWH
QITGCPITEG YGLSETSPVA TANRMNDKDF SGCIGMPISS TDVDIRDEQG ESLALGEVGE
ICIRGPQVMA GYWQRPEETA RAISEDGFFR TGDMGFMDAR GYTKIVDRKK DMILVSGFNV
YPNEIEEVAV MHPGVLEAAA IGVPDPHSGE AVKLFVVRKD PSLTEQQVKD HCATNLTNYK
RPRHVAFLEE LPKSNVGKIL RKDLRP
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