| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0525 |
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| Symbol | |
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| ID | 7388936 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 448005 |
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| End bp | 449180 |
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| Gene Length | 1176 bp |
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| Protein Length | 391 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643650164 |
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| Product | GGDEF family protein |
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| Protein accession | YP_002548377 |
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| Protein GI | 222147420 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGGTGG ATTTTAGTTC TTTACTTCTC GCCCTGGGCG TTTCCACCCT GTGTCTTCTT
TTCACCTTTC TGGGAACATG GATGGCGCGG CGGGAAAACT CCTTTCTGCT CAGCTGGGTT
ATCGGGCTTG CCCTCACCAT GGTCGGAATT CTGGCCTATG GCCTTTTCAC TTCGACCCCT
TCACGAGGTC TGGGCGCGCT GGCCATGTCC TCGATCATCA CCGGTTTCTT CATCCTTTAT
GCCGCCGCCA GGCAGTTTCG CACAGGGATT ATACCCTTCA AGACGCTGAT CGTTGTCTCC
TGCGTTGCTG TCATCGCGCT GAGTGCGGCC TTCCTGTCGG GATATGGCGG CATTGGCTTT
ATGCTGTTCA ACACCGCTAC CGCCATCGTG ATGTTGGTAA TTGCCCATCA ATACTGGCTT
GGACGGGCGG AATCGCCCGG CGTGCTTTCC GGCATGGCCG TGCTTTATGG CGCCACCAGC
CTCTCTTTCC TCGCCTGCGC CCTGGCTTTG GTCCAGCGTG GTCAGTGGCA GCTGGAAGTT
GCACCGAGCG GATGGGTGGA AGATATCAAT ATGGCAGTCT GCATTGCTGG CATGAGCGGT
ATCGGCGCCT TGTCTCTGAC CCTGCATCAG ACCCGGATCA CTGCCCGGCA CCGGCTAGAG
GCAATGACCG ATGCGTTGAC AGGCCTTTGC AATCGTAGGG CGCTGTTCAA TGCACACGGT
ACCAAAACCT TCCACGAGGA TATGGCGATG TTGGTTTTTG ACATCGACCG TTTCAAAGCG
ATCAATGACC GTTATGGCCA TGCTGTGGGT GACGAGGTGA TCCGTAATAT TGCTGCGGAA
CTGAAAGCAG CCATTGGTCT TTCCAGCGTC ACCCGCCTGG GAGGCGAAGA GTTTGCGGCT
GTGCTGGAAA ATGCTGCGCC AGGACGGGCC GAGTGGATCG GCGAGCGAAT CCGGCGCCAG
CTTCAGGATC GCGAAGTCGT GGTGGATGGA GACAGTTTCG TCGCAACGAC CAGTGTCGGC
ATTGCCTATG GCACAGCATC CGGCCTGACC TTCGATGAGA TCCTCAACCT GGCGGACAAT
GCGCTTTACA ATGCCAAACG GCTCGGTCGC AACCGGGTAG AAACGGCAGT GGCAAACTGG
GAGAGTGGCC TGTCAGTGGA AGCCGACAGC GCCTAA
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| Protein sequence | MMVDFSSLLL ALGVSTLCLL FTFLGTWMAR RENSFLLSWV IGLALTMVGI LAYGLFTSTP
SRGLGALAMS SIITGFFILY AAARQFRTGI IPFKTLIVVS CVAVIALSAA FLSGYGGIGF
MLFNTATAIV MLVIAHQYWL GRAESPGVLS GMAVLYGATS LSFLACALAL VQRGQWQLEV
APSGWVEDIN MAVCIAGMSG IGALSLTLHQ TRITARHRLE AMTDALTGLC NRRALFNAHG
TKTFHEDMAM LVFDIDRFKA INDRYGHAVG DEVIRNIAAE LKAAIGLSSV TRLGGEEFAA
VLENAAPGRA EWIGERIRRQ LQDREVVVDG DSFVATTSVG IAYGTASGLT FDEILNLADN
ALYNAKRLGR NRVETAVANW ESGLSVEADS A
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