Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0512 |
Symbol | |
ID | 7388924 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 433595 |
End bp | 434458 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643650152 |
Product | transcriptional regulator LysR family |
Protein accession | YP_002548365 |
Protein GI | 222147408 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.440355 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCAATC TCGATAGCGA CGCACTGGCA AGCTTTGTAG CTGTTGCCGA GACGGGCAGT TTCACGGCGG CGGCAGAACG GCTGGGACGC ACGCAGGCCG CGGTCAGCAT GGCGATCGGC AAATGGGAGG AGCGTCTTGA TCTGCGATTG TTTGATCGCG GGCATCGCCG GGTGACATTG ACGCCGATCG GGGAAAGATT GCTTGGCTAC GCGCGGCGCA TACGGGCAAT CGAGGATGAA GCCCTGGCCA CGCTGCTTGA AGGTCGCAAT GAAAGCCGCG TTCGGCTCGG CATGCCCGAT GACTACCTGA CACTGTTCGG TACGGCGCTG ATGCAGCGTT TTGCGCCACA GCATCCCAAG GTCAATCTGG ACCTACAATA TGATTTCTCT CACCATCTGG AAGGCATGGT TGAAAGCCGG GAGCTGGATA TTGCCATCAT CACGCAAAGT CCGGCAGAGC CTAAGGGGGA GTTGATCCGC CTGGAACGGC AGGTTTGGTG CGCGGCGCCA AACCGTTACC CGGAACACAG CAGTACCATT CAACTGGCGC TTTTTCCGGA CGGCTGCCGG TCCCGGCCAC AGGTTCTGGC AGCGCTCGAC CGTGCGGATC GCCGTTGGCG GATTGTCTAT TCGTCATCGG ACATTGCTGG AATTCAGCTG GCGGTTCATT CAGGAGACTT GTTGACGGTT CTGCCTGAGA CGGCAGTGCC TGCGAACTGG CGCAAGCTGG GGATGGATGA TGGCCTGCCG GAACTGCCGA TCCTGCGGCT GGCAATGGTT CTGCCCCAAC AGCCGCGCCT GCCGGTCAGG CAATTGGCGA CGTTCCTGCG TGCAGAATTC CAGCATTCTC TTTCTACCGC ATAA
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Protein sequence | MRNLDSDALA SFVAVAETGS FTAAAERLGR TQAAVSMAIG KWEERLDLRL FDRGHRRVTL TPIGERLLGY ARRIRAIEDE ALATLLEGRN ESRVRLGMPD DYLTLFGTAL MQRFAPQHPK VNLDLQYDFS HHLEGMVESR ELDIAIITQS PAEPKGELIR LERQVWCAAP NRYPEHSSTI QLALFPDGCR SRPQVLAALD RADRRWRIVY SSSDIAGIQL AVHSGDLLTV LPETAVPANW RKLGMDDGLP ELPILRLAMV LPQQPRLPVR QLATFLRAEF QHSLSTA
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