| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0463 |
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| Symbol | sigK |
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| ID | 7388469 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 394118 |
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| End bp | 394699 |
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| Gene Length | 582 bp |
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| Protein Length | 193 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643650114 |
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| Product | sigma factor |
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| Protein accession | YP_002548328 |
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| Protein GI | 222147371 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGCAG CTATCCCTGG ACCATTACGC GAAGTGGATG CATGGATGAG CGATGAGATC
GGGATATTGC TGGGGAAAAT TGCGCTCAAG GACCGTATGG CCCTGTCGGA GCTCTATCGG
CGCACCAGCC CGAAACTTTT TGGCATCTGC CTCCGTCTGC TGAAAGACAG GAGCGAGGCG
GAAGACGCAA TGCAGGAAAT CTTCGTCAAA ATCTGGCAGA GGGCTCAAAG CTTTGCCGCG
ACAGGCCATA ACGCCATGGG CTGGCTTGGA ACGATTGCCC GTTACCATTG CATCGACCGC
CTGCGCACGC GGACGCCAGT TTCTATAGAA CTCGACGAGG CTTGGCATGT TGCCGACAGC
GCGCCAGACC CGGAACAGAC CGCCAGCATA CGCAGTGAAG GAAAGCGCAT TGACAGCTGC
ATGGAAGCGT TGGAAGCTGA TCGTGCCGCC GCCGTGCGGC AGGCCTATGT GGAGGGGCTT
AGCTATCAGG AGTTAGCGGA GCAGTTCAAT GTACCGTTGA ACACGATGAG GACATGGCTG
CGACGCAGCC TTTTGGCATT GAGAGAGTGC TTGGAAAGAT GA
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| Protein sequence | MNAAIPGPLR EVDAWMSDEI GILLGKIALK DRMALSELYR RTSPKLFGIC LRLLKDRSEA
EDAMQEIFVK IWQRAQSFAA TGHNAMGWLG TIARYHCIDR LRTRTPVSIE LDEAWHVADS
APDPEQTASI RSEGKRIDSC MEALEADRAA AVRQAYVEGL SYQELAEQFN VPLNTMRTWL
RRSLLALREC LER
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