| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0405 |
|---|
| Symbol | |
|---|
| ID | 7388426 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 348081 |
|---|
| End bp | 348887 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643650070 |
|---|
| Product | ABC transporter nucleotide binding/ATPase protein |
|---|
| Protein accession | YP_002548285 |
|---|
| Protein GI | 222147328 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1137] ABC-type (unclassified) transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAAGTTC CCGGTTTGAC ATCCAAGCAA CAGGACGCGA ATGCCGCCGC GCCAACGGAC
GCAGCACGCG AGAAGAACAG GTACGAAGGT ACGCTGATCG CCCATGGGCT GACGAAAACC
TATAATACCC GCCGCGTGGT CAATGGGGCT TCGCTCGTCG TGCGCAGGGG TGAGGCTGTC
GGCCTTCTCG GGCCAAATGG CGCAGGCAAG ACCACCTGTT TCTACATGAT CACCGGCCTC
GTGCCGGTGG ATATGGGCAC GATCGCCATT AACGGCAATG ACGTGACCTC GATGCCGATG
TACCGCCGCT CACGGCTGGG CGTCGGCTAT CTACCGCAGG AAGCCTCGAT TTTCCGGGGC
CTGTCGGTCG AGGACAATAT CCGTGCCGTT CTGGAACTGC ACGAGAGCGA CAAGACCAAG
CGCGAGCAGA AGCTGAACGA ACTGCTTGCC GAATTCAACA TCGAGAAACT GCGCAAGGCG
GCAGCCGTCT CCTTGTCGGG CGGCGAACGG CGGCGCCTGG AAATCGCCCG GGCACTGGCA
ACCGATCCGA CCTTCATGCT TCTGGATGAG CCTTTCGCCG GTGTCGACCC GATTTCCGTG
TCTGATATCC AGAACCTCGT GCGGCATCTG ACGGCACGCG GGATCGGTGT GCTGATCACC
GATCATAACG TTCGAGAAAC GCTCGGACTG ATCGACCGTG CCTATATCAT CCACGCCGGT
GAAGTGCTGA CGCACGGGCG GGCCGACGAC ATCGTCAACA ATCCCGATGT ACGACGCCTC
TATCTTGGCG AGAAATTCAG CCTCTAA
|
|---|
| Protein sequence | MKVPGLTSKQ QDANAAAPTD AAREKNRYEG TLIAHGLTKT YNTRRVVNGA SLVVRRGEAV
GLLGPNGAGK TTCFYMITGL VPVDMGTIAI NGNDVTSMPM YRRSRLGVGY LPQEASIFRG
LSVEDNIRAV LELHESDKTK REQKLNELLA EFNIEKLRKA AAVSLSGGER RRLEIARALA
TDPTFMLLDE PFAGVDPISV SDIQNLVRHL TARGIGVLIT DHNVRETLGL IDRAYIIHAG
EVLTHGRADD IVNNPDVRRL YLGEKFSL
|
|---|
| |