Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0398 |
Symbol | hrcA |
ID | 7387839 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 342899 |
End bp | 343981 |
Gene Length | 1083 bp |
Protein Length | 360 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643650065 |
Product | heat-inducible transcription repressor |
Protein accession | YP_002548280 |
Protein GI | 222147323 |
COG category | [K] Transcription |
COG ID | [COG1420] Transcriptional regulator of heat shock gene |
TIGRFAM ID | [TIGR00331] heat shock gene repressor HrcA |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGGAAAA ACCCAATTAC CGCAGGCGAT GTGTCAATGG CACTGGATGA GCGATCCAGG GAGATCTTTC GTCGAATCGT CGAGACCTAT CTGGAATCCG GTGAACCGCT TGGATCGCGC AATCTGTCGC GTATTCTGCC GATGTCGCTG TCGCCCGCCT CAGTGCGCAA TGTGATGAGC GACCTGGAAG AGCTGGGCCT GATCTACTCC CCCCATATCA GCGCCGGGCG CTTGCCGACT CAGACGGGGT TGAGGTTCTT CGTCGATGCT TTCATGCAGG TCGGTCGCTT GTCGGAGCAA GATCGCGGCT CGATAGAGCG GCAGATGCGC TCCTCGGAAG ACCAGCCGAT GGAAACGCTC TACAACGAAG CCAGTCGTAT GCTGTCTGGC CTGTCACGTG GTGCGGGCCT GGTGGTGGCG GCGAAATCCG ATCCGGTGCT GAAACACGTC GAATTCATCC GACTGGAGCC GACCAAGGCG CTGGCAGTGC TGGTCGGTGA GTTTAACCAG GTCGAAAACC GGATCATCGA ACTCCCGGCG GGCATCACAG CCTCGCAATT GACCGAGGCG GCCAATTTCC TCAATGCGCA TCTGTCCGGC CAGACGCTGC ATGAAGTGCG CGGCCAACTG GTCCAGTTGA AGGATCAGGT GGCCAGCGAG CTGGATGTTC TCTCCCAGGA TCTCGTGCAG CGTGGGCTGG CGGTCTGGTC CGGCGGCGAG GGCGACAAAC CGACCCGGTT GATCGTGCGT GGCCGCGCCA ATCTGCTGGA AGGTCTGGCC GGCGTCGAGG ATGTGGACCG GCTGCGGCTG CTGTTTGATG ATCTGGAGCG TAAGGAAAGC CTGATCGAGA TTCTCAACCT GGCCGAAAGC GGGCCTGGTG TCAGAATTTT CATTGGTTCG GAGAACAAGC TGTTTTCGCT CTCCGGGTCG TCACTGATCG TCGCGCCCTA CCGCGACGGC GACGACCGCA TTGTCGGGGC CGTCGGCGTG ATTGGTCCGA CCCGCCTCAA CTATTCCCGT ATCGTGCCGA TGGTGGATTA TACCGCCCAG GTGATGGCCA AGATGACCCG CAGCGGCCAC TGA
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Protein sequence | MGKNPITAGD VSMALDERSR EIFRRIVETY LESGEPLGSR NLSRILPMSL SPASVRNVMS DLEELGLIYS PHISAGRLPT QTGLRFFVDA FMQVGRLSEQ DRGSIERQMR SSEDQPMETL YNEASRMLSG LSRGAGLVVA AKSDPVLKHV EFIRLEPTKA LAVLVGEFNQ VENRIIELPA GITASQLTEA ANFLNAHLSG QTLHEVRGQL VQLKDQVASE LDVLSQDLVQ RGLAVWSGGE GDKPTRLIVR GRANLLEGLA GVEDVDRLRL LFDDLERKES LIEILNLAES GPGVRIFIGS ENKLFSLSGS SLIVAPYRDG DDRIVGAVGV IGPTRLNYSR IVPMVDYTAQ VMAKMTRSGH
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