| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0317 |
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| Symbol | |
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| ID | 7387772 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 271874 |
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| End bp | 273319 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643649998 |
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| Product | GGDEF family protein |
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| Protein accession | YP_002548213 |
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| Protein GI | 222147256 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | CTGCATCGCA ATGAAGCCTG GCAACTCGAT GAATTTTTCA ACGTCGTGAC GATTACCGGA
CTGCTCAGTC TGATCTTCGC CGCGAGGCGC ATTGGCGAGC TGAAAGCAGA GATCCGGCTG
AGAAACGCCG CCGAAAACAA TATGGACTGG CTGGCCCATC ACGACGCCCT GACCGGGCTG
CCCAATCGTC GGGCCCTGTC CGATCGGCAG GCAGAGATGG AAGCCTTGCA GGATGGACGC
CACTGGGTGA TCTACTCCAT AGATCTCGAC GGGTTCAAGA AGGTCAACGA CCTCGTGGGC
CATCAGGGCG GCGACCTGCT TTTGCGGGAA GTGGCGCAGC GCTTGATGCA TGCGCTGCCC
AATGCCGATG TCTACCGGAT GGGCGGCGAT GAATTCCTGT TGGTCAGCCC TCGCCCGACG
AATATGGATT ATCGCCATGC GGGCCAGCAT ATCGCCAGGC TTTTGTGCAA TCCTTACGAT
ATTGGCGGCA TGACCAGCGA AATCGGTGCC AGTGTTGGTT TTGCGCTGTT TCCGGAAGAC
AGCGACGACT TCAAGGATGC CACGCACTGC GCCGATGTGG CGATGTATGT CGCCAAGAAA
GCCGGGCAGA ACAGCGTCTA TGGCTTCGAG CGAATCATGG AAGACCGGGT CATGCGGCGG
GCCGAAACCG AAATGGCGCT GAAGCGTGCG ATCCGTGACA ACCTGATCGT TCCCTATTAC
CAGCCATTGA TCGATCTCAA GTCCGGTGAA TTGCGTGGAT TCGAGGCGTT GGCACGATGG
AAGACCGGCC CTAACCATTA CGTTCCCCCC AGTGATTTCA TCGAATTGGC GGAGACTGCC
GGGCTGATTG TCGAGCTGTC GGATAGTCTG TTTCGCCAGG CTTGTCTTGA CGCGCTGCAA
TGGCCCGACA CTGTACGGCT AGCCTTCAAC ATCTCGCCAA CGCAATTCAT CGACCGCCAG
TTGAGCCTGC GGATCATGTC GATCCTGATG GAGACAGGAT TTCCACCCAG CCGGCTAGAG
ATCGAGATCA CCGAGACGGC GCTGGTGCAT GATATCGAAC TGGCAACCCA GATCCTGGCC
GACCTCCGGC AGAGCGGCAT CCGGATTGCC TTGGACGATT TCGGCACGGG CTATTCCAGC
CTGTCGCAAT TGTCGAAATT CACCTTCGAC AAGATCAAGA TCGATCGGAG TTTTGTCATG
AGCTACGATG TTGACAAAAA ACAGGAAGAT ATCATGCGCG CCATTCTGGG CCTCGGCCAG
GGTCTTGGCA TTGCCACTAC CGCCGAGGGT ATCGAGGATG AGAATCAGTT GGCATTTCTG
AAAAGCATCG GCTGCGATTT CGGCCAGGGC TTTTTGTTCA GCAAGGCGCT GCCAGCAGAA
GAGGCGCTCT CATTAACGAC CAGGGATGCC ACAATAAAGC CAGATTCGGC AACCGTGGCA
CGATAG
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| Protein sequence | MHRNEAWQLD EFFNVVTITG LLSLIFAARR IGELKAEIRL RNAAENNMDW LAHHDALTGL
PNRRALSDRQ AEMEALQDGR HWVIYSIDLD GFKKVNDLVG HQGGDLLLRE VAQRLMHALP
NADVYRMGGD EFLLVSPRPT NMDYRHAGQH IARLLCNPYD IGGMTSEIGA SVGFALFPED
SDDFKDATHC ADVAMYVAKK AGQNSVYGFE RIMEDRVMRR AETEMALKRA IRDNLIVPYY
QPLIDLKSGE LRGFEALARW KTGPNHYVPP SDFIELAETA GLIVELSDSL FRQACLDALQ
WPDTVRLAFN ISPTQFIDRQ LSLRIMSILM ETGFPPSRLE IEITETALVH DIELATQILA
DLRQSGIRIA LDDFGTGYSS LSQLSKFTFD KIKIDRSFVM SYDVDKKQED IMRAILGLGQ
GLGIATTAEG IEDENQLAFL KSIGCDFGQG FLFSKALPAE EALSLTTRDA TIKPDSATVA
R
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