| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0265 |
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| Symbol | deoA |
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| ID | 7387569 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 230312 |
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| End bp | 231631 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643649959 |
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| Product | thymidine phosphorylase |
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| Protein accession | YP_002548174 |
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| Protein GI | 222147217 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0213] Thymidine phosphorylase |
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| TIGRFAM ID | [TIGR02643] thymidine phosphorylase
[TIGR02644] pyrimidine-nucleoside phosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGGCTG TGGAGATCAT TCGCCGCAAG CGCGACGGAG AGGAGCTTTC CAGCGCCGAT
CTCCAGACCT TCATCCGCGC CTTGAGCCGG GATGAACTGT CGGAAGGGCA GATTGCCGCC
TTTGCCATGG CGGTCTTTCT GCGGGGCATG AGCGATGCCG AGACGGTGGC GCTGACCTTG
GCGATGCGTG ACAGCGGTAC GGTTCTGTCG TGGAAGACGG CGGGCCGTCC CGTGGCTGAC
AAGCATTCCA CCGGCGGTGT CGGCGACAAT GTCTCGTTGA TGCTGGCCCC GATGATGGCC
GCCTGCGGGT TGGCTGTGCC GATGATTTCC GGGCGGGGAC TTGGCCATAC CGGTGGGACG
CTGGACAAGC TGGAATCGAT ACCCGGCTAT GATATTGCGC CCGATGCCTC GGTCTTCCAT
GCCTTGGTGG AGGAGATTGG TTGCGCCATC ATCGGCCAGA CCGCCGACCT CGCTCCCGCC
GACAAACGGC TTTACGCGGT TCGCGATGTG ACGGCGACGG TGGAATCCGT GCCGTTGATC
ACGGCATCCA TTCTGTCCAA AAAGCTCGCC AGCGGATTGG AGAGCCTGGT GATGGATGTG
AAGTTCGGCA ACGGTGCCTT CATGGGCCAG ATCGACGAGG CCCGGGCGCT GGCGCGCTCA
CTGGTGGCGG TCGCCAATGG CGCAGGCACC AGAACCTCGG CACTGCTGAC CGATATGAAC
GAGCCTCTGG CGGATTGTGC AGGCAATGCC GTGGAAATAG CCAATGCGGT CGCCTTCCTG
AGAGGTGAGA AGGCGGGAAC CCGGTTGGAG ACCGTGACAT TGGCGCTCGG TGCCGAGATG
CTGGTCAATG CCGGGGTTGA GCCGGATCGG AACGCCGCTG ACATCAGGTG TCGCCACGCC
CTGGAAAGTG GTCGGGCTGC CGAGATTTTC GGACGTATGG TGCATGGGCT GGGCGGGCCG
CTGGATTTCA TCGACAGGGC TGGCCAATAT CTGCCCAAGG CGGTGCTGGA TATTCCGGTT
CTTGCCACGG CATCTGGCTT CATTTCCACG GTCGCCACCC GCGATATCGG CCTTGCGGTG
ATCGACCTCG GCGGAGGTCG CCGACGTGCC TCGGACAGGA TTGACCATTC GGTTGGCTTC
AGCGGCTTAC TGCCGGTGGG GACCGCTGTT ACCAAAGGCG ACGTTCTGGC CGTGGTCCAT
GCCGCCGATG AAGCCAGCGG CACCCGCGCC GCGCAGGTTA TTGCGGCAAG CGTTGCCATC
GGCGATGAAG CGTTGGTGCC GGGACCTGCT GTGGTTGAAC GGCTCAACTC TCAATCTTGA
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| Protein sequence | MQAVEIIRRK RDGEELSSAD LQTFIRALSR DELSEGQIAA FAMAVFLRGM SDAETVALTL
AMRDSGTVLS WKTAGRPVAD KHSTGGVGDN VSLMLAPMMA ACGLAVPMIS GRGLGHTGGT
LDKLESIPGY DIAPDASVFH ALVEEIGCAI IGQTADLAPA DKRLYAVRDV TATVESVPLI
TASILSKKLA SGLESLVMDV KFGNGAFMGQ IDEARALARS LVAVANGAGT RTSALLTDMN
EPLADCAGNA VEIANAVAFL RGEKAGTRLE TVTLALGAEM LVNAGVEPDR NAADIRCRHA
LESGRAAEIF GRMVHGLGGP LDFIDRAGQY LPKAVLDIPV LATASGFIST VATRDIGLAV
IDLGGGRRRA SDRIDHSVGF SGLLPVGTAV TKGDVLAVVH AADEASGTRA AQVIAASVAI
GDEALVPGPA VVERLNSQS
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