Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0171 |
Symbol | truB |
ID | 7388334 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 160946 |
End bp | 161875 |
Gene Length | 930 bp |
Protein Length | 309 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643649890 |
Product | tRNA pseudouridine synthase B |
Protein accession | YP_002548108 |
Protein GI | 222147151 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.347774 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCAAAC CCAGAAAACC CAAGGGCCGT CCGGTTTCCG GCTGGCTGAT CCTCGACAAG CCGGTGGATT ACGGCTCGAC CGAGGCCGTC GGCAAGATCA AGTGGCTGTT CAATGCCCAG AAAGCTGGTC ACGCCGGAAC GCTTGATCCG TTGGCCTCCG GCATGTTGCC GATTGCGCTG GGCGATGCCA CCAAGACGGT TCCCTACGTC ATGGATGGCC GCAAGATCTA CGAATTTACC GTCACCTGGG GCGAAGAACG CTCCACCGAC GATCTTGAAG GTGAGGCAAC CCAAACCTCC GACCAGCGCC CGACCGAAGA ACAGATCCGC GCTTTGCTGC CGGATTATAC CGGTGTGATC AACCAGATCC CCCCGCAGTT TTCGGCCATC AAGATTGCCG GGGAGCGCGC TTATGATCTG GCCCGCGAAG GCGAGGTGGT TGATATTCCC TCCCGCGAGG TGGAAATTCA TCGGTTGACC CTGTTGAGGG CCGACCATGA TTGCGCTGAT TTCGAAGTTG AATGCGGCAA GGGCACCTAT GTGCGCTCGC TGGCGCGTGA TATGGGCCGG GATCTTGGCT GCTACGGCCA TATTTCGGAG TTGCGACGCT CCTTCGTCGC GCCGTTTGCC GAAGACATGA TGGTGCCGCT CGAAGATCTG GTGGAGCTGG AAAAGATCGA GGATCGTGAC GAGCGGCTGG CAGCCCTCGA TGCTTTCCTG TTCGATACCG GCGAGGCGCT GATGGCGCTG CCGCAGATCC GGATCAGCGA CGATCAGGCC CATCGGTTGC GGATGGGCAA TCCGATTATC CTGCGGGGCC GGGATGCGCC GGTAGCCGAA CCGGAAGCAG TGGCACTGGC CGGTGGCAAG CTGGTGGCGA TCGGCGAGAT CGGCGAGGGC GAGTTTCGCC CGAAGCGGGT TTTCGCCTGA
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Protein sequence | MSKPRKPKGR PVSGWLILDK PVDYGSTEAV GKIKWLFNAQ KAGHAGTLDP LASGMLPIAL GDATKTVPYV MDGRKIYEFT VTWGEERSTD DLEGEATQTS DQRPTEEQIR ALLPDYTGVI NQIPPQFSAI KIAGERAYDL AREGEVVDIP SREVEIHRLT LLRADHDCAD FEVECGKGTY VRSLARDMGR DLGCYGHISE LRRSFVAPFA EDMMVPLEDL VELEKIEDRD ERLAALDAFL FDTGEALMAL PQIRISDDQA HRLRMGNPII LRGRDAPVAE PEAVALAGGK LVAIGEIGEG EFRPKRVFA
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