Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0094 |
Symbol | glpD |
ID | 7388276 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 90949 |
End bp | 92499 |
Gene Length | 1551 bp |
Protein Length | 516 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643649832 |
Product | glycerol-3-phosphate dehydrogenase |
Protein accession | YP_002548050 |
Protein GI | 222147093 |
COG category | [C] Energy production and conversion |
COG ID | [COG0578] Glycerol-3-phosphate dehydrogenase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCGCACTG TAATGCTGCA TTGCGAAAGG GAGAGAAACG TGTCCGGCGA TCCTGTCTTC GACATATTCG TTATTGGTGG TGGCATTAAC GGCTGCGGCA TTGCCCGTGA TGCTGTCGGG CGGGGCTATA CCGTTGCGCT GGCGGAAATG AATGATTTCG CGTCAGGCAC CTCTTCGGGT GCCACCAAGC TCATTCACGG CGGCTTGCGC TATCTTGAAC ATTATGAATT TCGGCTGGTG CGCGAAGCGC TGATGGAGCG TGAAGTACTC TGGGCCATGG CGCCACATAT CATCTGGCCG ATGCGTTTCG TGCTGCCGTT CCACAAGGGC GGCATTCGTC CCGCCTGGCT GATCCGGCTG GGCCTGTTTC TCTACGATCA TCTGGGTGGC CGTAAATTAC TGCCCGCCAC CAAAACATTG AATATGCGCA AGGACAAGGC GGGCAAGCCG CTGAAGCCTC TGTTTACCCG CGCCTTTGAA TATTCGGATG GCTGGGTCGA TGATGCCCGT TTCGTCGTGC TGAATGCCCG CGATGCTGCG GATCGTGGCG CCACAATCCT CAGCCGCAAC CGCGTCATTG GCGCGCACCG GGATGGCGAT CTCTGGATCA TCGAGGTCGA GGACCGCGCC AGCCGCGCAC GCAGCACCTA CAAGGCGCGG ATGCTGGTCA ATGCAGGCGG CCCATGGGTC GATAGCGTGC TATCCAATGC GGTCGGCAGA AACAATGTTC ACAACGTGCG GCTGGTGCAG GGCAGCCATA TCGTGGTAAA GAAGAAATTC GATGATCCCC GTGCCTATTT CTTCCAAAAT CCGGACAACC GTATCATCTT CGCCATTCCC TATGAGACGG ATTTCACCCT GATCGGCACG ACCGATCAGG ATTATCAAGG TGATCCGAAG GATGTGAAGA TTTCCAGCGC CGAGATCTCC TATCTTTGCG ATGCCGCCAG CGAATATTTT GCCGAGCCGG TCCGGCCTGA GGACATTGTC TGGTCCTATT CCGCCGTGCG GCCACTCTAC GATGACGGTG CTTCCAAAGC GCAGGAGGCC ACCCGCGATT ACGTGCTGAA ACTGGAAACG CCGGAAAAGG CCGCGCCGCT GCTTAACGTA TTCGGCGGCA AGCTGACCAC CTATCGGCGT CTGGGTGAAC ATGCATTGGA AAAGATCGGC GAGGCCATCG GCGTCAAGGG CAAGCCCTGG ACCGCGACAA GCCATTTGCC GGGCGGTGAT TTTCCGGCAA CCGGCTATCT GGCGGAAGTG GAGAGGCTGA AAAAAGTATT TCCATTCCTG GAGGACCGTT GCGCGCGTCG GCTCGTGCGG TGCTATGGCA CGTTTGCCAC GACGATCATC AATGGTGCCA AAAGCCTGGA GGGGCTGGGG CACTATTTCG GGGGAACCCT GTATCAGGCA GAGGTGGACT GGCTGATTGC TCGGGAATGG GCGGCAACAG CGGAGGATAT TCTCTGGCGC CGCACCAAGC AGGGCCTGTT CCTCAGTGTC GAACAGGCAC AGGTGCTGGA AGACTATATC GAGGAGGCGC GGGCGGCCTG A
|
Protein sequence | MRTVMLHCER ERNVSGDPVF DIFVIGGGIN GCGIARDAVG RGYTVALAEM NDFASGTSSG ATKLIHGGLR YLEHYEFRLV REALMEREVL WAMAPHIIWP MRFVLPFHKG GIRPAWLIRL GLFLYDHLGG RKLLPATKTL NMRKDKAGKP LKPLFTRAFE YSDGWVDDAR FVVLNARDAA DRGATILSRN RVIGAHRDGD LWIIEVEDRA SRARSTYKAR MLVNAGGPWV DSVLSNAVGR NNVHNVRLVQ GSHIVVKKKF DDPRAYFFQN PDNRIIFAIP YETDFTLIGT TDQDYQGDPK DVKISSAEIS YLCDAASEYF AEPVRPEDIV WSYSAVRPLY DDGASKAQEA TRDYVLKLET PEKAAPLLNV FGGKLTTYRR LGEHALEKIG EAIGVKGKPW TATSHLPGGD FPATGYLAEV ERLKKVFPFL EDRCARRLVR CYGTFATTII NGAKSLEGLG HYFGGTLYQA EVDWLIAREW AATAEDILWR RTKQGLFLSV EQAQVLEDYI EEARAA
|
| |