| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0055 |
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| Symbol | addB |
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| ID | 7389050 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 44683 |
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| End bp | 47871 |
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| Gene Length | 3189 bp |
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| Protein Length | 1062 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643649794 |
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| Product | double-strand break repair protein AddB |
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| Protein accession | YP_002548018 |
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| Protein GI | 222147061 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3893] Inactivated superfamily I helicase |
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| TIGRFAM ID | [TIGR02786] double-strand break repair protein AddB, alphaproteobacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | CTGATGTCCA GCCTGCAAGC CCGCATCTTC ACCATTCCCC CGGATCGGCC TTTCCTGCGG
CTGATTGCCG AGACCCTGTG CGATGGCCGT CTCGCCCCCG GCTTTCGCTA TGATCCAGCC
GATCCCCTGT CTTTGTCCAA GGTCACGATC CTGGTGCCAA CTCGGCGCGC CGTGCGCGTG
CTGCGCGCGC AGTTCGTCGA GGTGCTGGGT GGCCAATCCG CCATTCTGCC GATGATCAAG
CCCCTGGGCG AAGCCGAGGA TGATGCCAGT TATTTCGACG CGGATACCCC GGCGCTGCTG
GCGTTGAACC CGCCGATCAG CAATACGGTG CGGCTGCTGG AACTGGCGCA GTTGATTCTC
GCCTGGCGCA ACAAGCTGCC GGATATCGTG CTGAGCATTC ACACCGAAAC CCCGCTTGTC
GCTCCGGCCA GCCCGGCTGA TGCCGTATGG TTGGCGAGGG CGCTGGTGGA ACTGATCGAT
TCGGTGGAAA CCGAGGAGCG TGATTGGGCC GATCTCGACA AGCTCGATGC CCGTGATTTT
GCCTCCTGGT GGCAATTGAC GCTGGCTTTC CTCGGCATTG CCAGTGCCTA TTGGCCTGCC
CGGCTGGAAG AGTTGAACCG GTCTTCGCCG GTTCTCCACC GCAATGCCTT GCTGCGCACC
GAACGCGACC GTGTTGGTCA CCTTTCTGAT CCTCATCCGG TGATCGTCGC GGGCTCGACC
GGCTCGATTC CTGCTGCGTC CGAGCTGATC GCGGCGGTGG CGCGCTTGCC TCAGGGGGTG
ATCGTGCTGC CGGGGTTGGA CAAGGCCATG CCGGATGATC AGTGGCACAG CGTCGGGGGT
GAACAGCCTC CCGGCATGCC GCCGGAGCCG ACCGCCCGCA CCCATCCGCA ATACGGCCTG
CACCGGCTTT TGGGCCGTCT AGGCTTGACC CGTGACGACG TGGGCGTGCT GGAAGAGGCA
GAACCCGACC TTGCCGACCG CAGCGAAATT CTCTCCCGGG CGCTGTCGCC TGCCAAGGCA
ACTGACCAAT GGACCGCCTG GCGGCAGGCA TTCGGGGATA ACAGGTTTCA GGCCGCCTTT
GCCGATGTGG CGCTGATTGA GGCGGCCAAC GAGCGGGAAG AGGCGATCGC CATTGCCATT
GCCCTCAGGC TGGCCCTGGA GCGGCCCGGT GCTGATGGTG GAGAAAGCCG CGCTGCGCTG
ATTACCCCTG ACCGCAACCT TGCGCGTCGG GTCGCGTCAG AACTGGCCCG GTTCGGCATC
GAGGCCGACG ATTCGGCGGG TACGCCATTT TCGGCGACGC CGCAGGGCAC GTTGCTGGTG
CTGGTGTTGG AAGCCGTGTT GCGGCCCGGC GATCCCGTTG CCATCGTCTC CTTGCTTAAG
CACCCACTCG CCCGGTTTGG CTTGCCCGAC GATGGACATC GTGAAGCCAC CGACGCTTTG
GAAGCCATTG CGCTGCGCGG CGGCACCGGT GCCATCGACA TCGCTGCGCT GGCACCGCTG
TTCGATGAAC AGGTGGTCGC CCAGTTCGAC GACCGCCATC CACCGGCCTG GCGGCGCTCT
TTTACCGATC AGACCCGGCA GCAGGCACGG ATATTGGCCG AGGCAATCGC AGAGGCGGTG
GAACCGCTTG CCGGTCATGT CGTCGCCAAG CCGGATGGCC ACCATTTCAC CACCCGTTTG
TCTTTGAGGG AATGGGCCGA GCGTACCGGC CAGGTGCTGG AGGCCGTGGC CCGCACCGAT
GAGGGTGATC TTGGCCCCCT CTGGGCCAAT GAGGCCGGTG CCGTTTTGGC CCGGCTGCTC
AGCGAAATCA TGGAAACCGA TGGCCAGCTA AGCGCCGATG GTCCGCAATG GATCGAGATT
GTCGCGGCGC TGACCGCCAG CGAATCGGTC AAGCCAAAAT CGCTGCGCCA TCCGCGGGTC
TTCATCTTCG GCGCGCTGGA ATCGCGTCTG CAAAGTGTCG ATACGATGAT CCTCGGTGGG
TTGAATGAAG GATCATGGCC CGGCACCACC ACCAATAACC CGTTTTTGTC GCGCAGCATG
AAAACCGAAA TGGGACTGGA GCCGCCGGAA CGGCAGATCG GCCAGCTTGC CCATGATTTC
GAAATGGCCA ATGGCACCCG CCACCTGATC TATTGCCGCG CCCTGCGGCA GGGATCGGCC
CCCACCGTTG CCTCCCGCTG GCTGCAAAGG CTGCTGGCGC TGGGTGGCAA GGATTTTGCT
GAGACCCTGA AAGCCAGGGG TGAGCGCTAC CGGCATTTTG CTGACCTGCT CGATAAAGGC
GCAGATCAAG CCGCCGCCCA ACGCCCGCAG CCAAAGCCGC CCGCCGATCT GCATCCGAAA
ACCTATTCCT TCAGCGAGGT CGGGCGTCTC AGGCGCGATC CCTATTCGAT CTATGCCCGC
CGCATTCTGA AGCTCGATCC GGTTGAACCG TTCAACAGCG ATCCAGGTGC CTCCGAACGC
GGCACGCTCT ACCATGCTAT TGTCGAGCAA TTCGTGGCGC GTATGCCCGA AAAGCTGGGG
CCTGACACTG AACAGTTGAT GAGTGAGATT GCCGACACGC TGTTTGCCGA GGAAAATCTG
CCGCCGCATA TCCATGTTGT CTGGCGCAAG CGTTTCTCCG AGGTTGGCCT CGCCTTTATC
GAGTGGCAAC GCCAGCGCGA TCCGGCCAAG CTGGTAACGG AGGCCCGTGC CGGGGTAGAA
CTTGGCGAGA TCGATATCCG GCTCACTGGT ATTGCCGACC GGATCGATAT CCGGGCTGGT
CACGCCGATA TCATCGATTA CAAAACCGGT CTTAACCCCA GTGTTTCCCA GGCCCGCAGC
CTACTTGACC CGCAATTGGC TTTGGAAGCT GCGGCTCTGA CCATGGGCGC CTTCAAGGAT
GTCGGAAGGC TGAATCCGGA TAATTTGATT TATGTCCGGC TGCGGCCCGG CGGGCGCTTC
AAGGCTGATC AGGTTAATAA CGAGCTGACC GGCAAGGGCG ACAAGGCAAA GTCGGCACTG
GATCTGGCGC ATGAATCCAT CGCGCAACTG ACCCGCTTCG TGACCCTGCT GCAATCGGGC
GAGCGCGGCT ATGTCTCGCG GCTGATGCCA GCGATGATGA ATGATTTCAG CGGCGACTAC
GATCATCTGG CCCGGGTCGC TGAATGGTCC ACCGCAGAAG CGGCAGAGGA GAGCAGCAGT
GATGACTGA
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| Protein sequence | MMSSLQARIF TIPPDRPFLR LIAETLCDGR LAPGFRYDPA DPLSLSKVTI LVPTRRAVRV
LRAQFVEVLG GQSAILPMIK PLGEAEDDAS YFDADTPALL ALNPPISNTV RLLELAQLIL
AWRNKLPDIV LSIHTETPLV APASPADAVW LARALVELID SVETEERDWA DLDKLDARDF
ASWWQLTLAF LGIASAYWPA RLEELNRSSP VLHRNALLRT ERDRVGHLSD PHPVIVAGST
GSIPAASELI AAVARLPQGV IVLPGLDKAM PDDQWHSVGG EQPPGMPPEP TARTHPQYGL
HRLLGRLGLT RDDVGVLEEA EPDLADRSEI LSRALSPAKA TDQWTAWRQA FGDNRFQAAF
ADVALIEAAN EREEAIAIAI ALRLALERPG ADGGESRAAL ITPDRNLARR VASELARFGI
EADDSAGTPF SATPQGTLLV LVLEAVLRPG DPVAIVSLLK HPLARFGLPD DGHREATDAL
EAIALRGGTG AIDIAALAPL FDEQVVAQFD DRHPPAWRRS FTDQTRQQAR ILAEAIAEAV
EPLAGHVVAK PDGHHFTTRL SLREWAERTG QVLEAVARTD EGDLGPLWAN EAGAVLARLL
SEIMETDGQL SADGPQWIEI VAALTASESV KPKSLRHPRV FIFGALESRL QSVDTMILGG
LNEGSWPGTT TNNPFLSRSM KTEMGLEPPE RQIGQLAHDF EMANGTRHLI YCRALRQGSA
PTVASRWLQR LLALGGKDFA ETLKARGERY RHFADLLDKG ADQAAAQRPQ PKPPADLHPK
TYSFSEVGRL RRDPYSIYAR RILKLDPVEP FNSDPGASER GTLYHAIVEQ FVARMPEKLG
PDTEQLMSEI ADTLFAEENL PPHIHVVWRK RFSEVGLAFI EWQRQRDPAK LVTEARAGVE
LGEIDIRLTG IADRIDIRAG HADIIDYKTG LNPSVSQARS LLDPQLALEA AALTMGAFKD
VGRLNPDNLI YVRLRPGGRF KADQVNNELT GKGDKAKSAL DLAHESIAQL TRFVTLLQSG
ERGYVSRLMP AMMNDFSGDY DHLARVAEWS TAEAAEESSS DD
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