| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0046 |
|---|
| Symbol | |
|---|
| ID | 7389043 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 36283 |
|---|
| End bp | 36741 |
|---|
| Gene Length | 459 bp |
|---|
| Protein Length | 152 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643649787 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002548011 |
|---|
| Protein GI | 222147054 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1493] Serine kinase of the HPr protein, regulates carbohydrate metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAGA GCCGGCTCAA CCTGCATGCA ACCGGTGTCG TGCTGGGTAG GCGAGGCTAT
TTGATCATGG GGCCGAGTGG GTCGGGGAAG TCGCAACTGG CCCACCTCCT GCTGGAAAAT
GCGCGGCAAA ATGGCCTTTT TGCCGCTCTT GTGGCCGACG ATAGGGTATG GCTGGAAGCC
CGAGGCGGAA GAGTGATCGC GTCCCGACCC CAGACAATTG CCGGGTTGAT GGAAATCCGA
TTCAGCGGAT TGGTGACCGT TCCAAGCCTC GATGCGGCGG TGATCGATGC CGTCGTCCTT
TCGGTCGAGC CATCGTCGAT GACGGAACGC CTGCCGCAAA GCGCTGAAAG CAGGTGTTTT
TTTCCGGGTC AATCCTTACC TGTCCTTCGC CTTTGCCCGG CCCATCATCC AAGCGTTGCG
GGGCTGCAAC GATTGCTGGA GGCGTGGGCG TCAGATTAA
|
|---|
| Protein sequence | MNESRLNLHA TGVVLGRRGY LIMGPSGSGK SQLAHLLLEN ARQNGLFAAL VADDRVWLEA
RGGRVIASRP QTIAGLMEIR FSGLVTVPSL DAAVIDAVVL SVEPSSMTER LPQSAESRCF
FPGQSLPVLR LCPAHHPSVA GLQRLLEAWA SD
|
|---|
| |