| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0013 |
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| Symbol | gyrB |
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| ID | 7389016 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 8119 |
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| End bp | 10554 |
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| Gene Length | 2436 bp |
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| Protein Length | 811 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643649760 |
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| Product | DNA gyrase subunit B |
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| Protein accession | YP_002547984 |
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| Protein GI | 222147027 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
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| TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGAAA CAACCGATGA AGCAAATGCC GCCAGCACTG CCTATGGTGC TGACTCCATC
AAGGTGCTGA AAGGCCTCGA TGCTGTCCGC AAACGTCCCG GCATGTATAT CGGTGATACG
GATGATGGGT CCGGCCTGCA TCATATGGTC TATGAAGTCG TCGATAACGC TATTGACGAG
GCGCTTGCCG GTCATGCCGA TATCGTCACG GTAACGCTGA ACGCGGATGG ATCAGTGACC
GTGACCGACA ATGGACGCGG TATTCCCACC GACATCCATA CGGGCGAAGG CATTTCGGCT
GCCGAAGTCA TCATGACTCA GCTTCATGCC GGCGGTAAGT TCGACCAGAA TTCCTACAAG
GTCTCTGGCG GTCTGCACGG GGTTGGCGTT TCGGTTGTCA ATGCGCTGTC CGTCAAGCTT
TCCATGAAGA TCCGCCGTCA TGGCAAGGTT CATGAAATGA GCTTCACCCA CGGCGTTGCC
GATGCACCGT TGGCCGTGAC GGGCGATTAT CAAGGCCGCT CTGGTACTGA AATCACCTTT
CTGCCCAGCA CGGAAACCTT CACCCAGGTC GAGTTCGATT ATGGAACGCT GGAGCATCGC
CTTCGCGAGC TCGCCTTCCT TAATTCCGGT GTCCGCATTC TGCTGACCGA CAAACGCAAG
TCCGATATCC GCCAGGAAGA AATGCTGTAT GATGGCGGCC TAGAAGCCTT CGTGCGCTAT
CTCGACCGCT CGAAAAAGCC GCTGGTCAGT AATCCAGTCG CCATTCGCGG CGAGAAGGAT
GGCATTACCG TCGAAGTCGC GATGTGGTGG AACGACAGCT ATCATGAAAA TGTACTGTGC
TTCACCAACA ACATTCCTCA GCGCGATGGC GGCACGCATA TGGCCGGGTT CCGCGGCGCG
CTGACCCGCC AGATTACCTC CTATGCCGAC AGTTCCGGCA TAACCAAGAA GGAAAAGGTC
ACCCTTCAGG GTGAAGACTG CCGTGAAGGC CTGTCGGCTG TTCTGTCCGT CAAAGTACCC
GATCCGAAAT TCTCGTCGCA GACCAAGGAC AAGCTGGTTT CGTCGGAAGT GCGGCCTGTG
GTCGAAAGCC TGGTCAACGA AGCGCTCAGC ACTTGGTTCG AGGAACATCC GACCGAGGCG
AAGATTCTGG TGGGCAAGGT GGTGGAAGCT GCCGTTGCCC GCGAAGCCGC CCGCAAAGCC
CGCGAACTGA CCCGCCGCAA AGGCGCACTG GATATTGCCT CGCTGCCCGG CAAGCTCGCC
GACTGCTCTG AGCGTGATCC GGCCAAATCC GAACTCTTCC TCGTCGAAGG TGACTCGGCT
GGTGGTTCCG CCAAGCAAGG CCGCTCGCGT GAGCGCCAGG CGATCCTGCC ATTGCGCGGT
AAGATCCTTA ATGTGGAACG CGCCCGCTTC GACAAGATGT TGTCCAGCCA GGAAATCGGC
ACGCTGATTA CCGCGCTCGG CACGTCGATC GGCAAGGACG AGTTCAATGC CGACAAGTTG
CGCTATCACA AGATCATCAT CATGACCGAT GCTGACGTCG ACGGCGCTCA TATTCGCACA
TTGCTTCTGA CCTTCTTCTT CCGCCAGATG CCGGAACTGA TCGAGCGCGG CCATCTCTAT
ATCGCCCAGC CGCCGCTCTA TAAGGTTACA CGCGGCAAAT CCATTCAGTA TCTGAAGGAT
GAAAAGGCGC TGGAAGAATA TCTGATCGGC ATGGGCCTGG ACGATGCTTC GCTGAAGCTC
GGCAGCGGCG AAGTGCGCGC TGGACAGGAT CTGCGCGAAG TGGTGCAGGA CGCGCTGCGC
CTTCGCAGCC TGATCGATGG ATTGCATTCG CGCTACAATC GCAATGTCGT GGAACAGGCC
GCCGTCGTCG GTGCATTGAA TCACGAACTG ACCGCCAACC GGGAACGGGC CGAGCAGACG
GCGGCGGAAG TCGCCAAGCG TCTCGACCTG ATCGCCGAGG AAACCGAACG GGGCTGGGAA
GGCTTCGTGA CGGAAGAGGG CGGCTTGCGC TTCGAGCGCA TGGTGCGTGG TGTCAAGGAA
GTGGCGGCGC TGGATGTGGC ACTGATCGGT TCAGCCGATG CACGCCACAT TGACCAGCTC
GCCACCCGCT TGAACGATAT CTATGGCCAA CCGCCGGTAC TGACCCGCAA GGATGGCCAG
CAGACCATTT CCGGTCCGCG TAACCTGCTG GATGCGGTGT TCTCCTTCGG TCGCAAGGGC
CTGTCCATGC AGCGCTATAA AGGTCTTGGC GAGATGAATG CCGAGCAGCT GTGGGAAACC
ACGCTCGATC CGAATGTACG CTCGCTGTTG CAGGTTCGGG TCAATGACGC CACCGATGCC
GATAGCCTGT TCTCCCGCCT TATGGGCGAT GAGGTGGAAC CGCGTCGCGA TTTCATCCAG
GAAAACGCCC TGAATGTCGC CAATCTGGAC ATTTGA
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| Protein sequence | MTETTDEANA ASTAYGADSI KVLKGLDAVR KRPGMYIGDT DDGSGLHHMV YEVVDNAIDE
ALAGHADIVT VTLNADGSVT VTDNGRGIPT DIHTGEGISA AEVIMTQLHA GGKFDQNSYK
VSGGLHGVGV SVVNALSVKL SMKIRRHGKV HEMSFTHGVA DAPLAVTGDY QGRSGTEITF
LPSTETFTQV EFDYGTLEHR LRELAFLNSG VRILLTDKRK SDIRQEEMLY DGGLEAFVRY
LDRSKKPLVS NPVAIRGEKD GITVEVAMWW NDSYHENVLC FTNNIPQRDG GTHMAGFRGA
LTRQITSYAD SSGITKKEKV TLQGEDCREG LSAVLSVKVP DPKFSSQTKD KLVSSEVRPV
VESLVNEALS TWFEEHPTEA KILVGKVVEA AVAREAARKA RELTRRKGAL DIASLPGKLA
DCSERDPAKS ELFLVEGDSA GGSAKQGRSR ERQAILPLRG KILNVERARF DKMLSSQEIG
TLITALGTSI GKDEFNADKL RYHKIIIMTD ADVDGAHIRT LLLTFFFRQM PELIERGHLY
IAQPPLYKVT RGKSIQYLKD EKALEEYLIG MGLDDASLKL GSGEVRAGQD LREVVQDALR
LRSLIDGLHS RYNRNVVEQA AVVGALNHEL TANRERAEQT AAEVAKRLDL IAEETERGWE
GFVTEEGGLR FERMVRGVKE VAALDVALIG SADARHIDQL ATRLNDIYGQ PPVLTRKDGQ
QTISGPRNLL DAVFSFGRKG LSMQRYKGLG EMNAEQLWET TLDPNVRSLL QVRVNDATDA
DSLFSRLMGD EVEPRRDFIQ ENALNVANLD I
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