Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0009 |
Symbol | |
ID | 7389012 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 5183 |
End bp | 5881 |
Gene Length | 699 bp |
Protein Length | 232 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643649756 |
Product | Membrane associated transporter protein |
Protein accession | YP_002547980 |
Protein GI | 222147023 |
COG category | [S] Function unknown |
COG ID | [COG4395] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGGTTCTA ATGATTTTGT GACTCTCTTC TTTCTGGTGG CTGCGGTCCT GATTTTCTGG CAGCTGCGTA GCGTATTGGG ACGTCGCACT GGCAATGAAA AGCCACCGAA AGATCCTTTC GCCGGACGCC CGGACGCTGC ATCTCCAGCA GCGGAAGATG CGCGGGTCGT CACTTTACCG CGCCGTGACG AGGCCGATGG CGAGGAACGC CAGACGGCGA TCGACGCCTA TGCCCCGGCT GGCACCCCGC TGAACCAGCA ATTGCGCCAG GTCGTAGAGG TTGATCCGAG CTTTGTGCCG AAGGAATTCC TCAACGGTGC GCGCATGGCC TACGAAATGA TTGTCACGGC CTTTGCAGCT GGCGACAGGA AGAGTTTGAA GGATCTGCTG TCGCGTGAGG TCTATGACGG TTTCGATGCC GCAATCACCG AGCGCGAGCA GCGCGGCGAA GTGATGAAGT CCACTTTTGT CGGTATCGAC AAGGCGGAAA TCACCAGTGC CGAAGTCCGG GATCAGGAAG TCCAGATCAC CGTACGGCTG GTCAGCCAGT TGATTTCCGC CACTTATGAC AGTCAAGGCG CGGTGATCGA GGGCGACGCG GAATCGGTTG GCGATGTCAA CGATATCTGG ACCTTTGCCC GCGACACGCG CTCACGCGAT CCGAACTGGA AGCTGATCGC CACCGAATCC GACCAATGA
|
Protein sequence | MGSNDFVTLF FLVAAVLIFW QLRSVLGRRT GNEKPPKDPF AGRPDAASPA AEDARVVTLP RRDEADGEER QTAIDAYAPA GTPLNQQLRQ VVEVDPSFVP KEFLNGARMA YEMIVTAFAA GDRKSLKDLL SREVYDGFDA AITEREQRGE VMKSTFVGID KAEITSAEVR DQEVQITVRL VSQLISATYD SQGAVIEGDA ESVGDVNDIW TFARDTRSRD PNWKLIATES DQ
|
| |