Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0004 |
Symbol | aroE |
ID | 7389007 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 1648 |
End bp | 2508 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 643649751 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_002547975 |
Protein GI | 222147018 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCATGATT CACGTGAAAC ATTTTTGACG GGCGCCTTTG TTGCCGGCTA TCCAATCAAG CATTCACGGT CGCCGATCAT TCACAGCTAT TGGCTTCAAC AGCATGGTCT CATCGGTGGC TATGATAAAC TGGAGATCGA CCCTGCAGAC ATCGCGGATT TCTTCGCCCG AATGAAGTCA GGCAAGACCC GCTATCGGGG TGGTAACATT ACCATTCCGC ATAAAGAGGC GGCTTTTCAG ATAGCGGATG TCCCCGACAT GGTGGCAACG CAACTTGGGG CGGCTAATAC GCTTTGGCTT GAAAACGGTC TCATCCATGC CACCAATACC GATGTTTACG GTTTTCTGGC CAATCTGGAC CAAGGCCATG CCGGCTGGGA TAAGGCGCGT AAGGCTGTGG TGCTGGGGGC GGGTGGTGCC AGTCGGGCGA TCATTCAGGG GTTACTGGAT CGGGGATTGC AGCATGTTCA TGTTGTCAAT CGGACCCTGG CGCGAGCGCA GGACCTGGCG GATCATTTTG GTGCGGCCGT CCATGCACAT GGAAGAGAGC AACTGCAGGA GGTTTTGCAG GGCGCGGACC TCTTGGTCAA CACCACGTCT CTTGGCATGA ATGGTGAAGA TGTTCCACAG ATTGACTGGG ATAGGCTGTC ACCCGGCGCT TTGGTAACGG ATATTGTCTA CACGCCGCTG GAAACTGGCT TGTTGCGGCA GGCGAGGGCG GCGGGCTTTG CCACTGTGGA TGGTCTTGGC ATGCTTTTGC ATCAGGCCGT ACCTGGCTTT GAAAAATGGT TCGGCGTCCG GCCAGAGGTG ACGGATGATT TGCGGCAATT GTTGATTGCC GATCTGGAGA AGCAGCGATG A
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Protein sequence | MHDSRETFLT GAFVAGYPIK HSRSPIIHSY WLQQHGLIGG YDKLEIDPAD IADFFARMKS GKTRYRGGNI TIPHKEAAFQ IADVPDMVAT QLGAANTLWL ENGLIHATNT DVYGFLANLD QGHAGWDKAR KAVVLGAGGA SRAIIQGLLD RGLQHVHVVN RTLARAQDLA DHFGAAVHAH GREQLQEVLQ GADLLVNTTS LGMNGEDVPQ IDWDRLSPGA LVTDIVYTPL ETGLLRQARA AGFATVDGLG MLLHQAVPGF EKWFGVRPEV TDDLRQLLIA DLEKQR
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