Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_C0035 |
Symbol | |
ID | 3678111 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007412 |
Strand | + |
Start bp | 53901 |
End bp | 56708 |
Gene Length | 2808 bp |
Protein Length | 935 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 637715119 |
Product | hypothetical protein |
Protein accession | YP_320313 |
Protein GI | 75812696 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.981613 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGTTCGA CCGCCTCCAC GAAAACAAAG GACAAAATTG GTAAAAAATC CCTCGATACC GAACAATTAG GTGTTGTCAA AAACCTAACA CCGTTCGAGG ATATTACTCA TTTAGCCGGG ATTGCAAGTA TCTCACTTGC TGGTCGTAGA GATATCGGCG CACTCATCCT CCAGAAAAAA GAAGATATTC AAATTAAGTT CTGCTTCGAC GTACAAGGAG TCCACCCGTC TTTACCAGAA GAACAGATTC TCCCGATTTT TGAAAATATT GAGGGCGGAC TCAAAGAACT TCCCGAACGC GAAACCTTAA CAATTCATCT TGGTTCGTTC ACTGATGATT TTCTCCGGCA GCAGGAACTA AAAAAGATAG AGGATAACTG CGACCTAGAG CAACTAACTT TATTAGTGCG ATCGGAACGT CTGCGGGCAA GAGAACTCAC TAAAGCAGGA ACTCGTAAAA ATAAGTTTTT ACGTTTCTGG TGTACCTATA GTGTCCTGGC TTCAGAAGAC AGTCGCTCAA ATGATGCAAT TGAAAAAACT ATCAAACAAT TGCAAAATGC CTGGTTCCAA TTTACTGGAC AAATTCACGG TGTTCGGCAA GAACGAATTG AAACAATTTT ACGGGATAGT TTTACCTCTG GGTTTCAACG GTGGGAACAA CTTTTGACAA ACTCGATGGG GCTTTCAGTA CGAGCAGTCA CGAGTGAGGA AGTATGGTCA ATTCTTTGGA GCCAATTTAA CCGTAGCGAT GCACCCAAAG TTCCCAATCC CCTCATATTA GATGAAGAAG GACTTCGAGA AGTTCAAACT AGCGATTTCC ACATTCGCCA CCTGATGCTG GAGAATGAAA AATCTGTCCC GTTTCTCGAT CGCAGCTGGG TAAGACTGCA AGACAGGTAT ATCGGCGTTC TTCAGTTTAG CGAAAAGCCC CAAGGCTGGG TAGATGAATA CGCCCAGCTT CGATATCTGT GGGAAGTAAT ATCTAAAGAA AAAATCTCCG ACACTGAGAT TATCTGCCAG CTATCTAAAG CCAACCAGGG ACTTGCCAAA ACTGCTCTGC AACGGATTAC CAAACAGTCA ATTACCTCCA GTGCCATGTC TTCAGAGAAG GGGTCAATTG ACGTAAAAGC CAACATGAAC ATCGAGGAGG CAGTTAAGGC ACAAGAAACT ATCCTCAGAG GCAGTCTCCC GATTCATACT GCTGTTGTTT TTTGTGTCCA TCGCCACAGT CGTCAAAAAC TTGATGAAGC TTGTCAATAC CTTTCTAGCT GCTTCTTGCG CCCTGCTGTA GTTGAGAGAG AAATCGAGTA TGCCTGGAAA ACATGGTTAC AATGTGTACC TGTTGTTTGG GAAAACCTAC TTACAAGGCC ATTTAACCGT CGCCTGCCTT ATTTCTCATC AGAAGTTCCC GGACTCATGC CGATAGTTAG AACAGCTACG GGAGATAAAT CCGGGTTTGA GCTAATTGCT GAAGAGGGAG GAACCCCAGT ACATCTTGAT TTGTACAAGC AGCACAAAAA TCTCGCCATT TTTGGTACTA CTCGTGCGGG TAAATCTGTC TTAGTAGCAG GTCTATTAAC ACCTGCCTTG GCTCAAAACA TTCCCGTAAT TGCACTTGAT TATCCCAAAC CCGATGGTAC TAGTACGTTT ACTGACTACA CCAAATTTAT GGGAGAGGAA GGAGCGTATT TCGATATTAG TAAAGAGTCT AACAATCTAT TTGAATTACC TGATTTAAGG GGGTATGAGC CTGAAGTTAT TAAAGAAAGG ATGACCGATT TCAAGGAATT CTTGAAATCC ACATTAATGA TTATGGTACT AGGAACAAAT CCTGTAGGGG TAAGTCCGAC AACGGTATCA AATATTGAAA GTATTATTAC AATCACAATT GAAACTTTTT ATAACGATGA AGATATCAAG CTTCGGTACA AGCTAGCACT AGAAAATGGA TTAGGAACAC CTGAATGGGC AGATATTCCC ACACTTAAAG ATTTCTATAA TTATTGTTCG CCTGGGTTTA TAAAACTCGA TTCCATCACC AATAATAGTA AAGAAATTCT CGATGCCCTT GACCAAATCA GATTGCGATT AAAGTTTTGG CTAAATTCAC GAGTTGGGCA GTCAATCGCC AATCCATCTA GCTTTAAAAC TGATGCTCGA TTGCTTGTAT TCGCACTGCG ATCGCTTGGG AGTGAAGCCG ATGCCGCAGT CCTTGCCCTG AGTGCCTATT CCGCAGCCTT ACGTAGAGCT TTATCATCTA AAGTATCAAT ATTTTTCTTA GACGAAGCAC CGATTTTATT CAATTTTGAG AGCATAGCCG AGCTAATTGG TAGACTCTGC GCTAACGGTG CAAAAGCAGG TATACGTGTA ATTTTATCTG CCCAAGAACC AGAAAGTATT TTCCAAAGTA AGTCTGCTTC CAAGATATTT GCTAACATCA CAACCCGCCT GATCGGTCGG ATTCAAACAT CGGCAGTTGA CCCATTTGTG AACAGGTTTA AATATCCTTA TGAAATTATC TCGCGTAATA GTACCGAAGC ATTCTTTCCC AAACGCGAAA GTATTTATTC ACAGTGGTTA CTTGATGACA ATGGCAAACT TACTTTCTGT AGATATTATC CTGCTTATTG CTTACTTGCA GCAGTAGCAA ATAACCCGAA TGAGCAAGAA TTACGCACTC TATTTCTCAA TAAATATGCC GATAATCCAA TGCTGGGTAT GGTGAAATTT TCAGAAAGCT ATATACAACT GCTTCGGGGA GATGAGTTAA GTCAAGAAGC ACAACAATTA CTAAAAAATC AGCGATAG
|
Protein sequence | MSSTASTKTK DKIGKKSLDT EQLGVVKNLT PFEDITHLAG IASISLAGRR DIGALILQKK EDIQIKFCFD VQGVHPSLPE EQILPIFENI EGGLKELPER ETLTIHLGSF TDDFLRQQEL KKIEDNCDLE QLTLLVRSER LRARELTKAG TRKNKFLRFW CTYSVLASED SRSNDAIEKT IKQLQNAWFQ FTGQIHGVRQ ERIETILRDS FTSGFQRWEQ LLTNSMGLSV RAVTSEEVWS ILWSQFNRSD APKVPNPLIL DEEGLREVQT SDFHIRHLML ENEKSVPFLD RSWVRLQDRY IGVLQFSEKP QGWVDEYAQL RYLWEVISKE KISDTEIICQ LSKANQGLAK TALQRITKQS ITSSAMSSEK GSIDVKANMN IEEAVKAQET ILRGSLPIHT AVVFCVHRHS RQKLDEACQY LSSCFLRPAV VEREIEYAWK TWLQCVPVVW ENLLTRPFNR RLPYFSSEVP GLMPIVRTAT GDKSGFELIA EEGGTPVHLD LYKQHKNLAI FGTTRAGKSV LVAGLLTPAL AQNIPVIALD YPKPDGTSTF TDYTKFMGEE GAYFDISKES NNLFELPDLR GYEPEVIKER MTDFKEFLKS TLMIMVLGTN PVGVSPTTVS NIESIITITI ETFYNDEDIK LRYKLALENG LGTPEWADIP TLKDFYNYCS PGFIKLDSIT NNSKEILDAL DQIRLRLKFW LNSRVGQSIA NPSSFKTDAR LLVFALRSLG SEADAAVLAL SAYSAALRRA LSSKVSIFFL DEAPILFNFE SIAELIGRLC ANGAKAGIRV ILSAQEPESI FQSKSASKIF ANITTRLIGR IQTSAVDPFV NRFKYPYEII SRNSTEAFFP KRESIYSQWL LDDNGKLTFC RYYPAYCLLA AVANNPNEQE LRTLFLNKYA DNPMLGMVKF SESYIQLLRG DELSQEAQQL LKNQR
|
| |