Gene Ava_4974 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_4974 
Symbol 
ID3679083 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp6256177 
End bp6257445 
Gene Length1269 bp 
Protein Length422 aa 
Translation table11 
GC content43% 
IMG OID637720332 
ProductTPR repeat-containing protein 
Protein accessionYP_325466 
Protein GI75911170 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG5010] Flp pilus assembly protein TadD, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAACG AGTTTTATAA CCAGGGACTG GAAAAAGCTA AACAAAGAGA CTACGCTGGA 
GCCATTGAGG AATTTAGCCG TGCTTTAAAA CTTACTCCTT ATTTTGCGGA AGCTTATTTA
CAAAGGGGTT TAGCATATTA TGACTCAGGA GCAATCCTTT TGGCTGTGTC AGATTACACT
GAAGTTATCA GGATAAACCC TGAAAGTGTG GAAGCATATT ACTGTCGATC ATTAGCACGG
CTAGCTCTGA AAAATTTACC AGGGGCGCTG GAAGATGTAG AACAGGCGAT TCGGCTAAAT
ATTAATTATG CTGCGGCTCA TCACTTACGG GGGACAGTGC GGCGCAAACA GGGATACATT
CAAGATGCGA TCGCTAGTTT TAAACAAGCT GCGGAATTAT ACCTACAGCA GAAAGACCAG
GAAAATTGTC GTCTGTGTCT AGAGAAAATT AAACAGTTAC AGCCACCGAA ACAATCCACC
ATACAGCCAA CAAAGTCTCC CATTGCACCC ATCACATCTG TGAACGAATA TTTTACCCAG
CTATTAGACA AAGCCGAACA GGGAGACACC AGAGAAGCCA TAGCCGATTT AAACTGGATA
TTACAAGCCG ATCCTCAAGA TGCTCAAGCC TATTGCTGTC GGGGAGTGGT ACGGTGCAAA
ATGGGAAATT ATCGAGAAGC GATCGCCGAT TTTAACCAAG CATTACAATT AAACTTTCAA
GATGCAGTCG TTTACCGTAA CCGAGGTAAA GCACGTTCTC TATTAGGTGA TCATCGAGGT
GCGATCGCCG ATTTTAATCA AGCCATTCAA ATACAGCCAG AAGACACCTT AGGTTATGTT
GCCAGAGGAA ATACCTATCG TGCAATGGGT AATTATCTGG GTGCTATTCA AGACTATGGC
AAAGCGTTGC AGATTAACCC CCATGATGCC CAAGCTTACT ACAATCGCGG CATAGCTTAC
ACTTTTCTCG AAGAAATGCA AAACGCCGTT GAAGACTATC AACGTGCAGC CAGTATCTTT
TGTGAACAAC AAGACTGGGA AAATTACCAA CTAACCCAAG ATAGCCTCAA ACAAATTCAG
ACATCTATTC CCGAATATAA ACAACAAAAG TCGAATGTGC TGCGTCAAAA ACTCCTGCGG
TTGGTTGGTG GGTATTGGGA AATTGCTCAA AGATTAATTC AGCAGCAAAA AGATTACCAA
CCAGGGATGT CGGAAGAATG GTATATGCAG AAAGTGATTG ATGATTTAGA ACGCGATCGT
GGCAGATAA
 
Protein sequence
MNNEFYNQGL EKAKQRDYAG AIEEFSRALK LTPYFAEAYL QRGLAYYDSG AILLAVSDYT 
EVIRINPESV EAYYCRSLAR LALKNLPGAL EDVEQAIRLN INYAAAHHLR GTVRRKQGYI
QDAIASFKQA AELYLQQKDQ ENCRLCLEKI KQLQPPKQST IQPTKSPIAP ITSVNEYFTQ
LLDKAEQGDT REAIADLNWI LQADPQDAQA YCCRGVVRCK MGNYREAIAD FNQALQLNFQ
DAVVYRNRGK ARSLLGDHRG AIADFNQAIQ IQPEDTLGYV ARGNTYRAMG NYLGAIQDYG
KALQINPHDA QAYYNRGIAY TFLEEMQNAV EDYQRAASIF CEQQDWENYQ LTQDSLKQIQ
TSIPEYKQQK SNVLRQKLLR LVGGYWEIAQ RLIQQQKDYQ PGMSEEWYMQ KVIDDLERDR
GR