| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_4885 |
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| Symbol | |
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| ID | 3679209 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007413 |
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| Strand | + |
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| Start bp | 6149364 |
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| End bp | 6152279 |
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| Gene Length | 2916 bp |
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| Protein Length | 971 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637720243 |
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| Product | PAS/PAC sensor Signal transduction histidine kinase |
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| Protein accession | YP_325377 |
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| Protein GI | 75911081 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00047345 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00891826 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTGACA ATCTCGTGAC TATAGATAAA AATACTTATG ATTCTCTTCA ACAGGAACTC
ATAGGACTAC GCCAGGTAGT AGCAAAGACT TTACAACTAG GGTTATTGAT TGAGTATATA
CCTGCGGCGA TCGCTATTTT CGACAGTGAG ATGCGCTACT TGCTGGCTAG TCGGCGCTGG
CGAGAAGACT ATGACTTAGT TGATGAGAAT ATCGTCGGTC GTTCTCATCA TGATGTTTGT
CCAGAAATCA CTTTGGGTTG GCAGAACAGA TACGAGTGTT GTTTGGCGGG AAATACGGAG
AAATCTGAAG AGGAAACTCT GATCCGTCGG GATGGGACTA TTGATTGGGT GAAATGGGAA
ATAAATCCTT GGTATGAACC ATCAGGTGAG GTGGGTGGTT TAGCTGTTGT CTCTGAGGTA
ATTACCCCAC GCAAACAATC AGACATTGCT TTAGCCGATA GTGAAAGACG TTTAAGAGAT
ACGGAAGCAC GGTTGCAGCG TCTAGCTGAT AATCTGCCAG GGATGCTTTA TGAATTTTGC
CTGAAACCTG ATGGCACCAT GACTTTCCCT TATGTTTCTT CTGGGTGTCG AGAACTGATA
GAACGCAGTC CCCAAGAGTT ACAGGATGAT GCCTCGCTCA TTTTTGCCAA TACTCATCCT
GAGGATATGA TAGGGCTGCA AGAGGCGATC GCTAACTCTG CCAAAACTCT GCAAAACTTT
GAATATGAGT GGCGTATTAT CACTTCTTCT GGTCAGATAA AATGGGTTCA AGGAGTCTCC
CGACCGGAAC GTCAGCCAGG AGGCGAAATC ACTTGGTATG GTTATCTATT AGATATAAGC
GAACAGCAAG CCGTACTTCG TGAACGCAAG CAAGCAGACC AACAATTGCA ACAGCAAGCA
CAGTTGTTAC AAAGTATATG GGAAGGTGTA GATTACGGTA TCTGTGTCTT GGATGTTTTG
GATGATGAGG CAGAGTTTCG TTACGTTAAA ATAAATCCTG CCATGCACCG CATTAGTCTC
TTGCCAGTTG CATCTTTTAT TGGTAAAACA ACGGCAGAGT CACTGCCACC TGAAATTGCC
GATTTATATC GCCAACGCTA TCAACAATGT ATCAAGTCTC GAAAGAGCCT AGTCTTCGAG
GATAATTTCT TAGTTAACGA TAAAGAAACT TGGTGGTTCG TCAATATTAC ACCCCTTGGT
GATAGCAATT CACAAATTTC GCAACTCGTA GTGACAGCGA CGGAAATTAC AGAACGCAAA
CAAGCTGAAC AAGAACGGCA ATTGTTTGTC TCTCTGATTG AAAATAGCAG TGACTTTATT
GGTTTTGCGA CTTTAGCAGG AAAACCATTA TTTCTGAATG AAGCTGGACT TAAGTTAGTT
GGTCTTGATG GTTTAGACGC TCTGAAGAAT CTCCATATTA TGGATTTTTT CTTCCCAGAA
GATCAAGAAT ATATGGATAA ACACATTATG CGGGTGGTAA ATGAGCGTGG TTTATGGCAG
GGTGAATATC GTTTCCGCAA CTATCAGACT CATGAAGAAA TACCAGTTGA TTTTAATATA
TTTACTGTTA AAAGCTCGGA GACTGGTAAG CCTTTGTGTT TAGCAACAGT TACTCGTGAT
ATTCAGGAAC GTAGAAAAGT AGAAGCATTA CTGCAAGAAC AAGAGCAATT TTTACGTAAT
ATTTATGAGG GTGTTGATCA AATTATCTTT GTGGTTGATG TTTTAGAAAA CTTAGATTTT
TGTTATACCG GTTGGAACTC AACAGCAGAA AGATATACAG GAATTACTCG AAATGATGCT
ATTGGTAAAG CACCTGAGGA TATTTTTGGC AGTGTTGAAG GTTCTTTAGT CCGTCAACGA
TACAAAAACT GTGTGGAGGC TGGTGTTAGC ATTTCTTTTG AAGATTGTTT AACTTTCCAT
AATCAAGAAA CTTGGTGGTT AACTAAAATT AATCCCCTGA AAAATAGTGC TGGTAGAGTT
TATTGTCTAG TTGGGACAAC TTTAGATATT ACACAGCGCA AACAAAATGA AATTCAATTG
CGACAGCAAG CCGAAAATTT AGAAAACACT CTGCGTGAAT TACAACTTAC CCAAACTCAA
CTTATCCATA GTGAGAAAAT GTCTTCCATT GGGAATATGG TTGCAGGTGT AGCCCATGAA
ATCAATAATC CAGTTAACTT TATTCACGGT AATTTGATTC CAGCCAGTGA ATATGCTCAA
GACTTGTTAC AGCTAGTAGA ACTTTATAGA CTCCACTTTC CCTATCCGCC AGAAGAAATT
CAGGAATTCA TTATAGATAT TGAGTTTGAT TTCCTCAAGG AAGATTTGGT TAAGCTGCTG
CAATCTATGC GTATAGGAAC CCAACGCATT CGAGAAATTG TCTTATCACT CCGCAATTTT
TCCCGCCTTG ATGAAGCTGA ATTTAAGCAA GTAGATATTC ATGAAGGTAT CGATAGTACG
CTCATGATTT TACAAAATCG CCTAAAAGCT AAGTCAGACC ATCCAGAAAT TTTAGTCGTT
AAAAGTTATG GTGATTTACC TTTGATTGAT TGTTATCCTG GTCAGTTAAA TCAGGTATTT
ATGAACCTTA TCAGTAATGC TATTGATGCT TTAGAGGAGC CAGTAGTTGA TGGTCAATTG
TCAGTTGCTA AGCCTACAAT TTATATTCGT AGCGAAATGT TTAATAATAA CTGGGTGCGA
GTTACCATAT CAGATAACGG TGTAGGGATT CCTCAAGAAA TCTTATCAAA ACTATTTGAC
CCATTTTTCA CGACTAAGTC TGTGGGTAAG GGAACTGGCT TAGGTTTATC TATTAGTTAT
CAAATTGTTG TGGATAGACA CAATGGGAAA TTAACTTGCA ACTCGACACC TGGACAAGGA
GCAGAATTTA TCATTGAGAT TCCCATTCAT CAGTGA
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| Protein sequence | MTDNLVTIDK NTYDSLQQEL IGLRQVVAKT LQLGLLIEYI PAAIAIFDSE MRYLLASRRW
REDYDLVDEN IVGRSHHDVC PEITLGWQNR YECCLAGNTE KSEEETLIRR DGTIDWVKWE
INPWYEPSGE VGGLAVVSEV ITPRKQSDIA LADSERRLRD TEARLQRLAD NLPGMLYEFC
LKPDGTMTFP YVSSGCRELI ERSPQELQDD ASLIFANTHP EDMIGLQEAI ANSAKTLQNF
EYEWRIITSS GQIKWVQGVS RPERQPGGEI TWYGYLLDIS EQQAVLRERK QADQQLQQQA
QLLQSIWEGV DYGICVLDVL DDEAEFRYVK INPAMHRISL LPVASFIGKT TAESLPPEIA
DLYRQRYQQC IKSRKSLVFE DNFLVNDKET WWFVNITPLG DSNSQISQLV VTATEITERK
QAEQERQLFV SLIENSSDFI GFATLAGKPL FLNEAGLKLV GLDGLDALKN LHIMDFFFPE
DQEYMDKHIM RVVNERGLWQ GEYRFRNYQT HEEIPVDFNI FTVKSSETGK PLCLATVTRD
IQERRKVEAL LQEQEQFLRN IYEGVDQIIF VVDVLENLDF CYTGWNSTAE RYTGITRNDA
IGKAPEDIFG SVEGSLVRQR YKNCVEAGVS ISFEDCLTFH NQETWWLTKI NPLKNSAGRV
YCLVGTTLDI TQRKQNEIQL RQQAENLENT LRELQLTQTQ LIHSEKMSSI GNMVAGVAHE
INNPVNFIHG NLIPASEYAQ DLLQLVELYR LHFPYPPEEI QEFIIDIEFD FLKEDLVKLL
QSMRIGTQRI REIVLSLRNF SRLDEAEFKQ VDIHEGIDST LMILQNRLKA KSDHPEILVV
KSYGDLPLID CYPGQLNQVF MNLISNAIDA LEEPVVDGQL SVAKPTIYIR SEMFNNNWVR
VTISDNGVGI PQEILSKLFD PFFTTKSVGK GTGLGLSISY QIVVDRHNGK LTCNSTPGQG
AEFIIEIPIH Q
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