Gene Ava_4797 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_4797 
Symbol 
ID3679412 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp6028121 
End bp6028954 
Gene Length834 bp 
Protein Length277 aa 
Translation table11 
GC content42% 
IMG OID637720154 
Productpolysaccharide deacetylase 
Protein accessionYP_325289 
Protein GI75910993 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCAACA ACCACCTGAA AACAGAAAAA TCTCTTGGCG TGATGGCGAT CGCCACTTTT 
TTGGTAACTG GTGCTATTAC AGTGGTTACT CTCTTAGCCT TCCGCAAAAA CCAACCTCTA
ATAGTCACCC AAGATTTACC CGTTCCTCCC AATCAAACCC AATCGCCGCC ACCACCTAAA
TTAGACAAGC TGACCTTTAC TGTACCGATT CAATATCAAG GGAAAACAGT TTATCGGGTA
CAAACCAATA GTAACGAGAA AGTGATTTCT CTTACCTTTG ATGATGGGCC GTGGCAAAAA
ACCACGCCAG AAATTTTGGA GATTCTCAAA CAAAATCAAA TTAAAGCGAC ATTCTTTTGG
GTAGGACAAG CTATACAAGC AAATCCAGAC ATAGCTAAAC GAGTTGTAGC TGAAGGTCAC
GCTATTGGTA ATCATACTTG GCATCATTGG TATAGACGCA TGAATGAGGA CACAGCCAAG
AGCGAAATTG AACGCACATC TGACCTAATC TACAAAACTA CCGGGGTAAA AACTCATTTA
TTCCGTCCCC CTGGAGGAGT TTTAAACAAT GGATTAGCCG CTTATGCTAA AAGTCAGAAA
AATGCTGTGG TCATGTGGTC TTTGACTTCA GCCGACACAG ACCCCCGCGC TAAACCTGAA
GTATTTGTGA AAAACGTTGT CAAAGGCGCA AAACCTGGTT ACATAGTTTT GATGCACGAT
GGTGGAGGCG ATCGTCAAAG AACAGTAAAA GCCCTACCAC AGATTATTAG TGGACTGAAA
CAGCAAGGTT ATAAATTTGT GACAGTTCCC GAATTATTAG AAATGAAGCC GTAG
 
Protein sequence
MTNNHLKTEK SLGVMAIATF LVTGAITVVT LLAFRKNQPL IVTQDLPVPP NQTQSPPPPK 
LDKLTFTVPI QYQGKTVYRV QTNSNEKVIS LTFDDGPWQK TTPEILEILK QNQIKATFFW
VGQAIQANPD IAKRVVAEGH AIGNHTWHHW YRRMNEDTAK SEIERTSDLI YKTTGVKTHL
FRPPGGVLNN GLAAYAKSQK NAVVMWSLTS ADTDPRAKPE VFVKNVVKGA KPGYIVLMHD
GGGDRQRTVK ALPQIISGLK QQGYKFVTVP ELLEMKP