| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_4382 |
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| Symbol | |
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| ID | 3680568 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007413 |
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| Strand | - |
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| Start bp | 5488417 |
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| End bp | 5489964 |
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| Gene Length | 1548 bp |
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| Protein Length | 515 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637719735 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_324875 |
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| Protein GI | 75910579 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.807644 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.164924 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAAACC CATCTGTTAA TTCATCATCT GTACTTGTGC AACCACAGAC GGCTCAGGTG
CAACGCGGTC AAGATGGTCA TGATTTAATT GATTATCGGA CACAGGCACT AACGCAGACA
AATGATTGGT TTTACGGCAC AGAAGAACTA CTAGATGCGT TACCGCAGCG CTGGACGCGC
TCGATGTTGT ATTTGCTCAT CAGCTTTACA ATCGTTGTTT TGCCTTGGGC GATGTTTACT
AAGGTTGATG AAACGGGAAG TGCTAGAGGG CGTTTAGAAC CCCAAGGTGC AACTCAAAAA
TTAGGTGTTG CTGTTACTAG TAGTGTCAAG GCTGTCAATG TGGCAGAAGG GGCGACTGTT
AAGGCGGGAC AAGTGCTATT GGAATTAGAG TCTGATGTGT TGCAATCCCA GGTGGAACAA
GCACAGACAA GGTTAGAAGA ACTCATCAAT CGTCAAGGAC AGCAAGAGCT ACTGAAAAAC
CAATTGATGT TAACAATTAA CATCCAACAG CAGCAAAACC AAGCCCAAGA ATTAGAAAAA
ATGGCGCAAG TCCATCAAGC GCAGCAAAAC CTTGATGCTA GGCAGAGTAC CTATAATTTA
CAGAAGTTAG AAAAGTTGGC GCTGGTTGAA CAGGCTAGAC AGGATATCAA TACTAGTCAG
TTAGCACGAA ATTTAGGCAA TAGCCGTTTG CAAAGAGATA TTAAAGAAGT TGTTCGTTAT
CGCCGACTTT TAAGACAAGG TGCGATCGCT CAAATTAAAG TAGTAGAACT AGAAAAAATC
GCGGAAGACA GTCAACGTTC CCTATTGCAA GCCAACTCCG ATTTTACCCA AGCCCAGCTA
CGCCTACAAG AAAAAGAAAG CCATTATCAA ACCACTGTCA GCCAAACCTT AGCTGACATT
GAACAAGCAA AACTCCGCCT CCAAGAACAA CAAAGCAGCT ATCAAAGCCT TGTACAGACC
GGTAAGCTAG CGCTGTTAAG GAGTCAGGAA CAACTCAAAG ACTTACAAAA CCAACTAACT
ACCTTACAAT CAGAAATCAT CCAAACCAAG AGCCAGATTA ACGCCTTCAA GATTCAGATT
CAACAACGGG TAGTGCGATC ACCTGTTGAT GGTACGATTT TTGATCTACC AATCGATAAA
CCAGGCCCCG TAGTTGAAGC TGGACAGATA GTTGCTCAAA TTGCTCCTAA GAATGCAGCA
ATCATTCTCA GAAGTTCTAT GCCGAGTCAA CACAGTGGTT TCTTGAAAGT GGGAATGCCA
GTAAAAATCA AATTTGATGC CTATCCTTTC CAAGATTATG GAGTATTACC AGGACGTGTT
AGCTGGATTT CTCCTGACTC GAAAATTCAA ACTACTAGCC AGGGCAATGT AGAAGTTTAT
GAAATGGATA TAACTTTAGA TCATCCTTAT ATTCAAGCTG GTAATAAACG TATTATCTTA
ACCCCTGGAC AATCAGCCAC CGCCGAAGTT ATCATCCGCC AGCGTCGAGT TATAGACTTT
ATTTTAGACC CATTCAAGAA GCTACAAAAA GGTGGCTTAG AACTTTAG
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| Protein sequence | MPNPSVNSSS VLVQPQTAQV QRGQDGHDLI DYRTQALTQT NDWFYGTEEL LDALPQRWTR
SMLYLLISFT IVVLPWAMFT KVDETGSARG RLEPQGATQK LGVAVTSSVK AVNVAEGATV
KAGQVLLELE SDVLQSQVEQ AQTRLEELIN RQGQQELLKN QLMLTINIQQ QQNQAQELEK
MAQVHQAQQN LDARQSTYNL QKLEKLALVE QARQDINTSQ LARNLGNSRL QRDIKEVVRY
RRLLRQGAIA QIKVVELEKI AEDSQRSLLQ ANSDFTQAQL RLQEKESHYQ TTVSQTLADI
EQAKLRLQEQ QSSYQSLVQT GKLALLRSQE QLKDLQNQLT TLQSEIIQTK SQINAFKIQI
QQRVVRSPVD GTIFDLPIDK PGPVVEAGQI VAQIAPKNAA IILRSSMPSQ HSGFLKVGMP
VKIKFDAYPF QDYGVLPGRV SWISPDSKIQ TTSQGNVEVY EMDITLDHPY IQAGNKRIIL
TPGQSATAEV IIRQRRVIDF ILDPFKKLQK GGLEL
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