| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_3975 |
|---|
| Symbol | |
|---|
| ID | 3679649 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 4926919 |
|---|
| End bp | 4929354 |
|---|
| Gene Length | 2436 bp |
|---|
| Protein Length | 811 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637719327 |
|---|
| Product | Cache sensor hybrid histidine kinase |
|---|
| Protein accession | YP_324475 |
|---|
| Protein GI | 75910179 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG0784] FOG: CheY-like receiver |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000222358 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00723661 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCTT TGGTAAGCAA TGACTCAATT TCCATAAAAT CTCACCCTAG ACAGCAATCA
TCACGGAATT TTCTCATTCG ATTTATTCTT GGCGGTACAA CTCTGATTGT CAGTATTTCT
GCTTATTTTA GCTATTTAGC TGCCCACAAT ATGGCACTAG CAGATATACA AAAAAATGCT
TTTCTGGAAG TACAAACAGG AGTTGATCAA ATAGAGGCGT GGTTAAGTGT TCGCAAAGTC
GAGGTAAAAA CTTTAGCAAA TACTCCAGCC GTACGTTCTT TAGATTGGGC TGTAGCAGAA
CCTTATTTAA AGACTGAAGT TAAGAGAATC AAAGAATTTT TCTTATTCCA AATGTCAATT
GCGGATGGTT CTTACTACAC GACAAAGTCA GGACGCGCAA ACAACAATGT TAAGGATAGA
GAATACTTTC AACAGGGAAT AGCCGGAAAA AGCAGTGTTT CTGATCCTTT TATTAGCCGT
TCTACAGGAA TACCCTTGAT TGCGATCGCT ACTCCGATTC TATCAACTTC CAATTCACCC
ATAGGAGTGT TTCACGGTAG CGTCAAAGTT GACCATATTA CAAAGGTGAT CAATTCTCTC
ACCTACGGTA AAAATAGCTA CGCTTTTGCC CTCAATTCCC AAGGGGAGGC GATTGTTCAT
CCTGACGCGA CTTTAATGTC CACTACGGAA AAACCTGCCC CCAGTCTGCT GAAAATTAAT
AACCATAGTT TACAAGCGAT CGCCCAGCGC ATGGTTAACA AACAGCAGGG AATTGAGTTG
ATGGCAATTG ACGGTAAACA AAAATATATT GCTTATGTAC CATTAAAGGC TACAAATTGG
TCTGTAGCTT TGGTAATTCC CCGTGAAAAT ATTGAGTCTC GGCTGCAATT TCTAGATTTA
ATTGCGTTGA TTGTTGGCGG ATTAACTATC ACCATGATTA CTGTTTTGTG GCGAGTACAA
GCTTTTGAAC AGGCACAACT AAAAAAGTCT AAAGAGGCGG CTGATTTAGC TAACCATGCC
AAAAGCGAAT TTTTAGCTAA CATGAGTCAT GAACTAAGAA CGCCTTTAAA TGGGATTTTG
GGTTGCGCGC AAATTTTGCA ACGTTCCTCA AAGTTACCTG AGCAAGAACA ACATCACATC
AATATTATTG AACAATGTGG TTCACACCTG TTGACATTAA TTAATGACAT CTTGGATCTT
GCTAAAATTG AAGCCAAGAA ACTAGAACTG CATGGCGAAG ATGTACATTT TCCATCTTTT
ATACAAGGTA TTGCCGAAAT TTGCCAAATT CGTGCTGCAC AAAAAGATAT TTTATTTATC
TATGAACCTG CCAGTAATTT ACCTACATGG GTGCATATTG ATGCCAAAAG ATTACGTCAA
GTACTGTTAA ATCTGCTGGG TAATGCGATT AAATTCACTG ATCACGGTCA AGTTAAGCTA
AAAGTTGAGA CAATTGAAGA ATCCTCTAAT CAAAAACCAG TCAACCACCG TATTCGTTAC
TGTATAGAAG ATACAGGTAT TGGCATTACT GACGCAGAAT TAAGCAAAAT CTTCTTACCT
TTTGAACAGG TAGGTGAAAA AAAGCGTCAG ACGGAAGGAA CGGGACTGGG TTTAGCTATT
ACTCGTCAGT TAGTGCAGAT GATGGGGAGT GATATCCATG TCACAAGTCA GGTAGGAAAG
GGTAGCACTT TTTGGTTTGA ATTGGAGATA GTAGCTACCA ATGAATGGTT ACAGTCAATC
ATGACTACCT CCGTCAGAAA AATCATTGGT TTTGAGGGAA ATCCCCGCAG AATTTTGATA
GTAGACGATC GCTGGGAAAA TCGTATAGTC TTGAATGATT TATTGCAACC ATTGGGTTTT
GAAATAGTGG AGGCTGTCAA TGGTCAAGAT GGTTTAGAAC AAGCGATCGC TATTTCACCA
GACCTAATTA TCACAGATTT ACTCATGCCA GAAATGGATG GGTTTACATT AATTCAAAAT
CTGCGACAGA TGCCCCAGTT TGAGAATATT AAAATTATTG TTTCTTCCGC TAGTGTTTTT
GAATCTGATC AACATCGCAG CTTGGCAGTA GGCGGTGATG ACTTCCTCAG TAAACCCATA
CAAGCAGATG AATTATTGCG TCAATTAGAA CGTCATTTAA ATTTAGTCTG GATTTATCAA
CCTTCTGAGT CTGAAAATCA AGCAATCTCA GATGTAGTAA CTCAAAACAA TAGTCCATCA
GCACAATTAA TTACTCCCCA AGCAGAAGTA TTACAAGAAC TGATGGCATT AGCGAAAAAG
GGTAACTTTA ACGCCATTAT CAAGTGTGCA GATCAACTAG AGGCAGAAGA TACAAACTTT
GCTACTTTCG CTCATCAACT TAGACAACTA GCCAGACAAT TTGACGAGGA TGCAATCCTT
GATTTTTTGA CACAATATGA GGTAGAAATG GCATGA
|
|---|
| Protein sequence | MKPLVSNDSI SIKSHPRQQS SRNFLIRFIL GGTTLIVSIS AYFSYLAAHN MALADIQKNA
FLEVQTGVDQ IEAWLSVRKV EVKTLANTPA VRSLDWAVAE PYLKTEVKRI KEFFLFQMSI
ADGSYYTTKS GRANNNVKDR EYFQQGIAGK SSVSDPFISR STGIPLIAIA TPILSTSNSP
IGVFHGSVKV DHITKVINSL TYGKNSYAFA LNSQGEAIVH PDATLMSTTE KPAPSLLKIN
NHSLQAIAQR MVNKQQGIEL MAIDGKQKYI AYVPLKATNW SVALVIPREN IESRLQFLDL
IALIVGGLTI TMITVLWRVQ AFEQAQLKKS KEAADLANHA KSEFLANMSH ELRTPLNGIL
GCAQILQRSS KLPEQEQHHI NIIEQCGSHL LTLINDILDL AKIEAKKLEL HGEDVHFPSF
IQGIAEICQI RAAQKDILFI YEPASNLPTW VHIDAKRLRQ VLLNLLGNAI KFTDHGQVKL
KVETIEESSN QKPVNHRIRY CIEDTGIGIT DAELSKIFLP FEQVGEKKRQ TEGTGLGLAI
TRQLVQMMGS DIHVTSQVGK GSTFWFELEI VATNEWLQSI MTTSVRKIIG FEGNPRRILI
VDDRWENRIV LNDLLQPLGF EIVEAVNGQD GLEQAIAISP DLIITDLLMP EMDGFTLIQN
LRQMPQFENI KIIVSSASVF ESDQHRSLAV GGDDFLSKPI QADELLRQLE RHLNLVWIYQ
PSESENQAIS DVVTQNNSPS AQLITPQAEV LQELMALAKK GNFNAIIKCA DQLEAEDTNF
ATFAHQLRQL ARQFDEDAIL DFLTQYEVEM A
|
|---|
| |