| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_3586 |
|---|
| Symbol | |
|---|
| ID | 3679356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 4467191 |
|---|
| End bp | 4468615 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637718937 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_324087 |
|---|
| Protein GI | 75909791 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR02971] ABC exporter membrane fusion protein, DevB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.659041 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0297067 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAGGG TGACGGAAGA ACGTAGGTCA AGAGAGCAGC CACTTGATCT AGAACAACCT
AAGATTTGGT GGGGTCTTGC TGTAGCCCTA CCAGTAGCCG TGGCTGCGGG GTTACTAGCT
ACAGCTAAAT TTGAGCAATT AAAAAGGCTA GGCCCATCCG TACCTGTTAA ACCAGTCGTT
ACAAGTGTTA GTGCTGTGGG ACGTTTAGAA CCGCAAGGGG AAGTAATTAA ACTTTCGGCT
CCCGTGGGAG GAATGCAATC CGCATCACGA GTTAAACAAC TTTTTGTAAA AGAGGGAGAA
CGTGTTAGGA AGGGTCAAAT CATAGCAATT TTGGATAATC ACGATACCCA ACTAGCGGCC
GTGGAAGAAG CGAAAGCCAA ATTACTGGAA TCTCGCGCTA ACTTGGCTCA AGTCCGGGTT
GGTTCCCCCA GGGATATCCA AGCGCAAACC GCCGTAATTG CTCGCTTACA GGCGCAGTTA
GTTGGTGAAA GGGATGCTCA ACAAGCAACT ATTACGCGTA TCGCATCCCA ATTGAGTGCG
GAAAAAGTAG CGCAACAAGC ATTAGTTAAC CGCTTAGAAG CAGAACTCTT AGGACAGCAA
GACAGTTTAA GAGCCACTCT GAACCGCATT AGAGCCGAGC AACGTAACGC TCAAGTGGAT
GCGGGGCGCT ACGATTTTCT CTACCGGGAA GGTGCTATTT CCCAGCAAGA GCGAGATAGA
AGGCGATTAA CGGCGACTAC TGCTAATCAA CAGGTAATTG AAAGTCAAGC CACCTTGAGA
CAGGCGCTAG CCACTCTCAG ACAGCAAGTT GCTGAGGCTA GAGCTAATCA GATGAAAACT
CTAGCCAGTT TGCAACAGCA ACTCATCGAA GCGAGAGTTA CCCGTGACAA AACCGTAGCG
ACATTACAAA GACAAATTGA CGAAGAAAAA GCCAGGCTGA AAAGATTGGT GGAAGTTAGT
CCTACTGATG TGCAGATGGC TCAAGCTCAA GTTAGTAATG CGATCGCCAA CGTCAGAAAA
GCCGAAGCCG AATTAAAATT AAGCTACATT CAAGCACCCT CGGCGGGAGA AATCTTAAAA
ATTTATAGCA AGTCGGGAGA AGCCATCACC GCCGACGGTA TCGCCGAAAT GGGAGAAACC
GAGCAAATGA TGATTATTGC TGAGGTTCCT GAAGACAGTA TTGGTCGGGT ACGCATAGGC
CAAAATGTCA CAGCCAGCAG CGATAACGGA GCCTTTAGCG GGGAAATCAG AGGAACAGTC
ACCGAAATTG GCAGAAAAAT TGGCAAAAAA GATGTCTTAA ATACAGATCC AGCAGCTGAT
GTTGATGCCA GAGTTGTTGA AGTCAAAATT GCCTTATCAC CGGAAGACAG CCAAAAAGTC
TCTGGTTTAA CCTACGCCAA GGTAGTGGTT GACATTAATA AATAA
|
|---|
| Protein sequence | MSRVTEERRS REQPLDLEQP KIWWGLAVAL PVAVAAGLLA TAKFEQLKRL GPSVPVKPVV
TSVSAVGRLE PQGEVIKLSA PVGGMQSASR VKQLFVKEGE RVRKGQIIAI LDNHDTQLAA
VEEAKAKLLE SRANLAQVRV GSPRDIQAQT AVIARLQAQL VGERDAQQAT ITRIASQLSA
EKVAQQALVN RLEAELLGQQ DSLRATLNRI RAEQRNAQVD AGRYDFLYRE GAISQQERDR
RRLTATTANQ QVIESQATLR QALATLRQQV AEARANQMKT LASLQQQLIE ARVTRDKTVA
TLQRQIDEEK ARLKRLVEVS PTDVQMAQAQ VSNAIANVRK AEAELKLSYI QAPSAGEILK
IYSKSGEAIT ADGIAEMGET EQMMIIAEVP EDSIGRVRIG QNVTASSDNG AFSGEIRGTV
TEIGRKIGKK DVLNTDPAAD VDARVVEVKI ALSPEDSQKV SGLTYAKVVV DINK
|
|---|
| |