Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_3192 |
Symbol | |
ID | 3680671 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | + |
Start bp | 3966194 |
End bp | 3967111 |
Gene Length | 918 bp |
Protein Length | 305 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637718542 |
Product | histone deacetylase superfamily protein |
Protein accession | YP_323695 |
Protein GI | 75909399 |
COG category | [B] Chromatin structure and dynamics [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.00911775 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.000717233 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGGAATTGC CAATTATTTA TCACCCACAT TATGTTGCAC CATTGCCTGA AGGACATCGC TTCCCGATGG CAAAATTCAA AAAACTCTAT GAATTGCTCT TAAGTGATGA TGTAGCACAA ACAGAGCAAT TTTATACCCC AATCCTGCCA CACCCAGAGT TAATCGAGTT AGTTCATACC CCAGACTATG TGCGGTCTTA CTGCGAAGGT ACACTAGATA CTAAAGCACA ACGTCGAATC GGTTTACCTT GGAGTCCAGC ACTAGCAAAT CGTACCTGTA TAGCTGTGGG TGGAACAATA CTCACAGCAC AGCTAGCACT CAATCAAGGT TTAGCTTGTA ATACTGCTGG TGGTACTCAT CATGCTTTTC CTAGTTATGG TTCTGGTTTT TGTATTTTCA ACGATATAGC GATCGCCTCT CGCGTTCTCC AACAACAGCA ACTAGTCAAA AAAATCCTCA TTGTCGATTT GGATGTCCAT CAAGGAGACG GTACAGCGTT TATATTCCAA GATGATGACA GTGTTTTCAC ATTCTCCATG CACTGCGAAG TTAATTTCCC AGGAACCAAG CAACACAGTG ATTTAGATGT TCCCTTACCA GTAGGAATGG AGGATGATGC TTACCTACAA ACCTTGGCGA GTTACCTACC AGATTTGTTA TCTGAGATCA AACCAGACTT AGTATTTTAC GATGCTGGTG TTGATCCCCA CATAGGCGAT CGCTTAGGTA AACTAGCCTT AAGTGACACT GGCTTATTCC GTCGAGAAAT GCAGGTTTTA ACTACCTGTA TCAGCGCTGG TTATCCAGTC GCCTGCGTAA TTGGTGGTGG TTACGCTGAT GATATGACAT CCCTAGTTTG GCGACATTCC CTATTGCATC GTGCCGCTAG TGAGGTTTAC CGTCAATACA AGCTTTAA
|
Protein sequence | MELPIIYHPH YVAPLPEGHR FPMAKFKKLY ELLLSDDVAQ TEQFYTPILP HPELIELVHT PDYVRSYCEG TLDTKAQRRI GLPWSPALAN RTCIAVGGTI LTAQLALNQG LACNTAGGTH HAFPSYGSGF CIFNDIAIAS RVLQQQQLVK KILIVDLDVH QGDGTAFIFQ DDDSVFTFSM HCEVNFPGTK QHSDLDVPLP VGMEDDAYLQ TLASYLPDLL SEIKPDLVFY DAGVDPHIGD RLGKLALSDT GLFRREMQVL TTCISAGYPV ACVIGGGYAD DMTSLVWRHS LLHRAASEVY RQYKL
|
| |