| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_2817 |
|---|
| Symbol | |
|---|
| ID | 3681517 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | - |
|---|
| Start bp | 3486405 |
|---|
| End bp | 3489995 |
|---|
| Gene Length | 3591 bp |
|---|
| Protein Length | 1196 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637718163 |
|---|
| Product | WD-40 repeat-containing protein |
|---|
| Protein accession | YP_323325 |
|---|
| Protein GI | 75909029 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2319] FOG: WD40 repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.230726 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAGC AAAAAGCTCG ACGCAACCGA GGTGTAACCT TGACCCTCCA AGGTTGGGAT
AAACTTCAAG CTGCCAAAGC TAAAGCAGAA TGGGAAAAGA ATGGTGGAGA TAGCTTTTCT
TTGGAAGAAC TGAGCGATCG CACCCGTTTA GCTCTGCATA CTATATCTAG GATTTTGGCA
CGCTTGGAAC CTGTAGATAA AAGTTCCTTG CAGCTTGCTT TTGCTGCCTT TAATTTGGAG
TTATCTCCAA GCGATTACAC TCGTCCTACC TCAACCGTAG AAGAACTAGA AACTCGACAA
GGAAACCCAC AGTATGATTG GGCAGAAGCA CCTGATGTAT CTGTGTTTTT TGGTCGCAGT
GAAGAATTAT TGCAGCTACG ACAATGGGTA TTAGAAGAAC GGTGTCGTTT AGTTGGACTG
TTGGGAATTG GTGGTATTGG CAAAACCACT TTAGCGGTGA AATTAGGGCT GCAAATTCAA
GCCGAATTTG AGGTAGTGGT GTGGCGAAGT TTGCAAAATG CACCACCAGT AGATGAGCAA
GTTACAAACA TACTGCAATC TTTACTGTCG GCGTTGCAAA AGGAAATGGT GATTCCTGAA
AGCTTTGATG GCAAATTAGT AAAGCTGATG GAATGTTTGC ACTCGAACCG ATGTCTGCTG
ATTTTAGACA ATTTTGAGAC AATTCTCTCT GGTGGTCAAG CCGGGCAATG TCGTCCTGGC
TACGAGGGAT ACGGTCAATT ACTCAAACGC ATTGGCGAAG TACCTCATAT TAGTTGCCTC
CTGTTTACTT CTAGAGAAAA ACCTAGAGAA ATTGTACCCT TAGAAGGAGA AAGAACAGGA
GCTAAGTCTC TCCCATTAAA GGGATTAAAT ACTACTGAGG GACAAGAGTT ATTTCAGCAA
AAAGGACAAT TCACGGGTAC AGAACAAGAA TGGCAATTAC TCATCGAGCA TTATGGGGGT
AACCCCTTAG CACTCAAGAT GGTAGCAGCC GGAACCCAAG AGCTGTTCGA TGGTAGAATC
GCCCCTGTTT TAGAGTATGT AGAACACGGG ATACTAATTT TTGAAGACAT TGGCGACTTG
TTAGAACGGC AATTCTACCA TTTGTCACCA GTAGAAACGG AAGTAATGTA TTGGCTGGCA
ATTAATCGAG AGCCAGTATC CCTTGCCGAG TTAGTTGCTG ATATAGTGAC ATCTTCTTCC
CAGCGTCTTG TACCTTCAGC AATTAACTCT CTGTTGCAAA GGTCATTAAT TGAAAGAAGT
GGTAAGTATT TCTTTTTACA ACCAGTTGTG ATGGAATATA CCACCCAGCG ATTGGTTCAA
CAAATTCGTC AACAATTGTT AGGGGAAAAG TCTGCCCGTT TAGGCTTATT CCAAACCCAT
GCTTTAATCA AGGCAACAAG CAAAGACTTC ATCCGGGAGA CACAAAGGCA ATTAATTGTG
CAACCATTAC TTGAACAATT GTTGCTAGAG ATGGGCAGTC AAGAACAACT AATAATTTTG
TTACAGAATA TATTGGAGCA GCAAAGACAT CAAACTGCAA TCTTAACTGG GTATGCAGGG
GGTAATATCC TCAACTTTTT AGCGCATTTG CAAGTAAATT TACGGGAATA TGACTTCTCA
AATTTGTGCA TGAGGCAAGC TGACTTACAG CGTATCAATT TAGCTGGAGT CAATTTCCAA
AATACAGCTT TTGATCAGTC TGCATTTGCC ACAAGTTTAA AGAATATTTT TTCACTTGCC
TTGAGTCCAG ATAGAAAACT GTTAGCTACA GGCGATCAGG ATGGGCAAAT TCATTTGTGG
CAAATGGCAA ATAGAAAAAA CTTGTTGACA TTTAAAGGAC ATGAATGTGT AGTTTGGACA
GTTGCCTTTA GTCCAGATGG ACAAACCCTG GCAAGTGGTG GTCATGATGG ATTAATCAAA
TTGTGGGATG TACAAACGGG AAATTGTCTC AAAACTTTAG CTCAACACGA AGGTATTGTT
TGGTCTGTTC GCTTTAGTCC AGATGGACAA ACTCTTGTAA GTGGTAGTCT AGACGCTTCA
ATTCGTTTGT GGGATATCCG TCGAGGTGAG TGTCTTAAAA TATTGCACGG TCATACTAGT
GGGGTATGTT CAGTCAGGTT TAATCCAGAT GGTTCTATCC TGGCAAGTGG TAGCCAAGAT
TGCGACATTC GCTTATGGGA TCTCAATACA GATAAATGTA TAAAAGTTTT GCAAGGTCAT
GCTGGCAATG TACGCGCGGT TTGCTTCAGC CCAGATGGTA AAACTCTTGC TAGTAGCAGT
AGTGACCACT CTGTTCGGTT ATGGAATGTG AGTAAAGGTA CTTGCATCAA AACATTTCAC
GGTCATAAAA ATGAAGTATG GTCAGTTTGC TTTAGTTCAG ACGGTCAAAC CATAGCCACA
GGGAGTTATG ACTCCAGTGT GAGGTTGTGG GATGTGCAGC AAGGTACTTG TGTTAAAATT
TTTCACGGTC ATACCAGTGA CGTGTTCTCA GTCATTTTTA GTTCAGATCG CCACATAGTT
AGTGCTGCTC AAGATTTCAG TGTACGTATA TGGAATATAA GTAAAGGTGT ATGCGTGAGA
ACGTTACAAG GTCACTCCTG TGGGGCGTTT TCGGTCAGCT TTAACTCTGT ATGCCCGACA
GGAGTCGATT GTATGTTGGC GACAGGTAGT ATGGATGGTT TGGTTCGGCT ATGGGATGTT
GCATCTGGTT ACTGTACTAA AATTTTACAA GGTCACACAA ATTGGGTATG GTCAGTTAGC
TTTAGTCCAG ATGGTTCTAT ATTAGCTAGT GGCAGTCATG ACAAAAGCAT TAAACTGTGG
GATGTGATTT CTGGTCATTG TATTACAACT TTATACGGTC ATAATGGTGG AGTAACATCA
GTTAGCTTTA GTCCAGATGG TCAAACCTTG GCTAGTGCCA GTAGGGACAA GAGTGTAAAG
TTGTGGGATA TTCACGAGCG TAAATGTGTA AAAACATTAG AAGGTCACAC GGGTGACATC
TGGTCAGTTA GTTTTAGTCC AGATGGCAAT ACTTTAGCTA CTGCTAGTGC AGACTATTTA
GTTAAGTTGT GGGATGTGGA TGAAGGTAAA TGTATAACAA CTTTGCCTGG TCACACTGAT
GGAGTCTGGT CATTGAGTTT TAGTCCAGAT GGTAAAATAC TCGCTACTGG TAGTGTCGAT
CACTCGATTA GATTGTGGGA TACTAGTAAC TTTACTTGCT TAAAAGTGTT GCAAGGACAT
ACTTCTACTA TATGGTCAGT CAGTTTTAGC CCTAATGGTT CCACTTTGGC ATCCGCCAGT
TCTGACCAAA CAATCCGCTT ATGGGATATG AATAACTTTA CCTGTGTCAG AGTCTTGGAT
AGTCATACTA GTGGAGGATG CGCTGTTAGC TTTAATTCTG TTGGTAATAT CTTGGTTAAT
ACTAGTCAAG ATGAAGTAAT AAAGCTTTGG GATGTGGAAA CATTTGAGCG GATTAAAACC
CTGAAAGTAG ATCGCCTTTA TGAAGGGATG AACATCAGGG GGGTGACTGG GTTAACAGCA
GCGCAGCGAT CTGCACTCTT GGCTTTGGGG GCGGTGGAAG GTGTGGGGTA G
|
|---|
| Protein sequence | MKQQKARRNR GVTLTLQGWD KLQAAKAKAE WEKNGGDSFS LEELSDRTRL ALHTISRILA
RLEPVDKSSL QLAFAAFNLE LSPSDYTRPT STVEELETRQ GNPQYDWAEA PDVSVFFGRS
EELLQLRQWV LEERCRLVGL LGIGGIGKTT LAVKLGLQIQ AEFEVVVWRS LQNAPPVDEQ
VTNILQSLLS ALQKEMVIPE SFDGKLVKLM ECLHSNRCLL ILDNFETILS GGQAGQCRPG
YEGYGQLLKR IGEVPHISCL LFTSREKPRE IVPLEGERTG AKSLPLKGLN TTEGQELFQQ
KGQFTGTEQE WQLLIEHYGG NPLALKMVAA GTQELFDGRI APVLEYVEHG ILIFEDIGDL
LERQFYHLSP VETEVMYWLA INREPVSLAE LVADIVTSSS QRLVPSAINS LLQRSLIERS
GKYFFLQPVV MEYTTQRLVQ QIRQQLLGEK SARLGLFQTH ALIKATSKDF IRETQRQLIV
QPLLEQLLLE MGSQEQLIIL LQNILEQQRH QTAILTGYAG GNILNFLAHL QVNLREYDFS
NLCMRQADLQ RINLAGVNFQ NTAFDQSAFA TSLKNIFSLA LSPDRKLLAT GDQDGQIHLW
QMANRKNLLT FKGHECVVWT VAFSPDGQTL ASGGHDGLIK LWDVQTGNCL KTLAQHEGIV
WSVRFSPDGQ TLVSGSLDAS IRLWDIRRGE CLKILHGHTS GVCSVRFNPD GSILASGSQD
CDIRLWDLNT DKCIKVLQGH AGNVRAVCFS PDGKTLASSS SDHSVRLWNV SKGTCIKTFH
GHKNEVWSVC FSSDGQTIAT GSYDSSVRLW DVQQGTCVKI FHGHTSDVFS VIFSSDRHIV
SAAQDFSVRI WNISKGVCVR TLQGHSCGAF SVSFNSVCPT GVDCMLATGS MDGLVRLWDV
ASGYCTKILQ GHTNWVWSVS FSPDGSILAS GSHDKSIKLW DVISGHCITT LYGHNGGVTS
VSFSPDGQTL ASASRDKSVK LWDIHERKCV KTLEGHTGDI WSVSFSPDGN TLATASADYL
VKLWDVDEGK CITTLPGHTD GVWSLSFSPD GKILATGSVD HSIRLWDTSN FTCLKVLQGH
TSTIWSVSFS PNGSTLASAS SDQTIRLWDM NNFTCVRVLD SHTSGGCAVS FNSVGNILVN
TSQDEVIKLW DVETFERIKT LKVDRLYEGM NIRGVTGLTA AQRSALLALG AVEGVG
|
|---|
| |