Gene Ava_2421 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_2421 
Symbol 
ID3683103 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp3009069 
End bp3011123 
Gene Length2055 bp 
Protein Length684 aa 
Translation table11 
GC content43% 
IMG OID637717766 
Productresponse regulator receiver modulated diguanylate cyclase 
Protein accessionYP_322933 
Protein GI75908637 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000243595 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGAATTT TACTAGTAGA AGATGACGAA CTGATTGGCG AATTACTTGT TAAGTCGCTA 
ACAAGTCAGC ACTATACTGT TGATTTCGCC AAAGATGGAG AAGAAGGCTG GAATTTTGCG
GAGTTATATA CTTATGACTT GATTCTGTTA GATTTAATCT TGCCTAAGCT CGATGGCATT
AGTTTCTGTC GGCAGTTACG GGCTAGTGGT AATCAAACAC CGGTTCTTTT GTTAACTTCT
CAAGATACAA GCATTACAAA GGTTGCTGGC TTGGATGCTG GAGCAGATGA CTATGTGGCA
AAACCTTTTG ATTTTCAAGA GTTATTAGCT AGAATTCGGG CTTTATTACG TCGGGGTGGT
TCAGCTTTAC CGCCTCTGCT GGAGTGGAAT AACCTCCGGC TTGATCCGAG TACTTGTGAA
GTTGCCTGTG ATGGAAAACT CTTACATTTA ACTCCCAAAG AATACGGTTT GTTAGAACTG
TTTCTCCGCA ACAGTCACCG CATTTTTAGT TGTAGCGCTT TAATAGACCA ATTGTGGTCA
TTTGAAGAAC CACCCACAGA AGATACAGTC AGATCCCATA TCAAAGGATT GAGGCAAAAG
CTGAAAGCAG CCGGAGTAGT TGAAGATCCT ATTGATACGG TTTATGGGAT TGGGTATCGG
CTCAAACCTG TGCAGTCAGG AAGAGAAGAA GAATTAAATC TTGAAAAAGT TGCCGATGCG
ATCGCCAATC CGGTCGAGAA TGAGGTAAGA CAAGTATGGA AAGATGTAGT AGAGAAAATA
GAAGCGCGAG TAGCTGTAAT TGAACAAGCT TCTCATAAAC TGCTACAAAA CAAAGTCAGT
GAGGAAATAC TGTCAAAGGC CAAGGTGGAA GCTCACAAAT TAGCTGGTTC TTTGGGGATG
TTCGGCTCTG ATGAAGGTTC CCAGATAGCT CAAGAAATAG AATCTTTATT AGATAATGGT
AAAAAGCTAA AAGCGTCTGG TAGGAAGCAT TTGGGGCAAG TGGTTGAGGC ATTGCACCAA
GAATTAGAAA ATTTAAAATC TGGGTATAAA ACAGAACCAT CAGTAGTGGA TGCAAAAGCG
GATGATCGCC CCCTGGTGCT AGTGATTGAC AAAGACCAGG AATTAGTCAG GGAGAGCAGG
AGTCAGAGTT CAGAGGCGAT CGCCCCTGGG CAACTAACAC AAGCCAGAGT GATGATTGTA
GACGATGATC CGCAAATATT AACCGCACTC CAAACTTTAC TCAGTGCTTG GGGGATTAAA
GTCTATACCC TCGCCCATTC CCAGGGATTT TTGGAAGCGA TGGCACTGGC TGAACCAGAA
CTGCTGATTT TAAAGATGGA AATGCCTAGT ACTAGTGGTA TAGAATTATG CCAAATTGCC
AGACAAGAAC CCCAATGGGC TGGTTTACCA ATTCTTTTTC TTACCAATCG TCACGATACC
CTAACTAGAC AGCAAATTTT TATCGCAGGT GCTGACGATT ATATTAGTAA ACCCATTGTC
GAACCCGAAC TCATAGGGCG GATACTCAAC CGTCTAGAAC ACAATCGCTG GTTACAGAAT
TTAGCAGAAA TAGATACGCT GACATTGGTA GCTAATCGCC GTAAATCCAC CCAGGAATTA
AACCATTATC TTCAGTGGTG TCATACTCAC CAGCAGACCA TGAGTTTCGC TGTTGTAGAA
CTGGATGGAC TGAAGCAGAT TAATTATAAC TATGGTCATG AAGTAGGCGA TCGCATCTTA
TCTCAACTGG GCGAATTATT AAGGCAAATG TTCCATAGTC AAGATGTAGT CGGGCGCTGG
GGAGGGACGG AGTTTATCTT AGGAATGGCA GGAATAACCA AAGGTGAAGG GGTAAGGCGG
TTAGGGGAGT TACTGAAAAC TTTCCGCCAA ATTGAATTTA TTACTACTAG CAATCAATCA
TTTCACGCCA CCTTTAGCGC CGCAGTGGTG GAATATCCCC AAGATGGCGA CACACTTGAA
GCCCTATATC AAGCAGCTGA CATAGTTCTT AACCAAGCTA AGACGAGTGG AAGAGATCGA
GTGTTGAGTA GTTGA
 
Protein sequence
MRILLVEDDE LIGELLVKSL TSQHYTVDFA KDGEEGWNFA ELYTYDLILL DLILPKLDGI 
SFCRQLRASG NQTPVLLLTS QDTSITKVAG LDAGADDYVA KPFDFQELLA RIRALLRRGG
SALPPLLEWN NLRLDPSTCE VACDGKLLHL TPKEYGLLEL FLRNSHRIFS CSALIDQLWS
FEEPPTEDTV RSHIKGLRQK LKAAGVVEDP IDTVYGIGYR LKPVQSGREE ELNLEKVADA
IANPVENEVR QVWKDVVEKI EARVAVIEQA SHKLLQNKVS EEILSKAKVE AHKLAGSLGM
FGSDEGSQIA QEIESLLDNG KKLKASGRKH LGQVVEALHQ ELENLKSGYK TEPSVVDAKA
DDRPLVLVID KDQELVRESR SQSSEAIAPG QLTQARVMIV DDDPQILTAL QTLLSAWGIK
VYTLAHSQGF LEAMALAEPE LLILKMEMPS TSGIELCQIA RQEPQWAGLP ILFLTNRHDT
LTRQQIFIAG ADDYISKPIV EPELIGRILN RLEHNRWLQN LAEIDTLTLV ANRRKSTQEL
NHYLQWCHTH QQTMSFAVVE LDGLKQINYN YGHEVGDRIL SQLGELLRQM FHSQDVVGRW
GGTEFILGMA GITKGEGVRR LGELLKTFRQ IEFITTSNQS FHATFSAAVV EYPQDGDTLE
ALYQAADIVL NQAKTSGRDR VLSS