Gene Ava_2350 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_2350 
Symbol 
ID3683465 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp2916476 
End bp2918926 
Gene Length2451 bp 
Protein Length816 aa 
Translation table11 
GC content41% 
IMG OID637717695 
Productfilamentous haemagglutinin-like protein 
Protein accessionYP_322863 
Protein GI75908567 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3210] Large exoproteins involved in heme utilization or adhesion 
TIGRFAM ID[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR01901] filamentous haemagglutinin family N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.883366 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATTAA CTTTTGTCGG GTTTGGTGTG CTGAGTGTAA TCTGGTTATC TGCTGTTTAC 
AACTATAGTG TTCACGCACA AGTAACTCCC GATAATACTC TCAATACTTC TGTTACTTCG
ACTACTTCCA TGAGTGGAAG CAATAGTTAC ACTATCAACA ATGGCACTCG TGTTGGGAAT
AATTTATTTC ATAGTTTCAG CCAATTCTCT ATACTCAGTG GCGGTTCTGC TTCATTTGAC
AATGCCACTG ATATCCAAAA TATTTTTAGT CGGGTGACTG GTGGTAATAT TTCCAACATT
GATGGTGACA TCAGTGCCAA AGGTAGCGCC AACTTATTCT TACTCAACCC CGCAGGGGTT
ATTTTTGGGC AAAATGCCAG CTTAAATATT GGTGGTTCCT TTATAACCAC AACTGCTAAT
AGTATAAAGT TTGCCGATGG GACAGAATTT AGTGCTTTGC AAGGTGCGGA TCAACCTTTG
CTGACAATGA GCGCACCAGT GGGCTTGCAA ATGGGCAGTA ATTCTGCTTC TATCAAAACT
CAAGGAAGAG GATATGCAAA TAGCGGTTCT TTTATCGTTC CCACACCCAA CTCGACAGAA
CTACAGGTGA ACCCAGGGAA AACCTTAGCA TTGGTGGGTG GTAATTTACA AATAGACGGG
TTTATATTGA ATGCTCCAGA AGGGCGGGTA GAACTGGGTA GTACAAACGG AACTGGGCAA
GTTAGTTTAA TCCCAAATGC ACAAGGTTAT ACTCTGGGTC ATGAGGATGA ACAAATTTTT
GGTGATATTC AATTAGCCAA AAAGTCACTT ATAAACGTAA GTGGTGTAAA TTCAGGTTCG
GTTCGTCTAC AAGCAAGAAA TATCCTTTTA ACAGACGGTT CATTGATACT TGCACAAAAT
TATGGCTATC TTCCTGGTGG AGAAATTAGC CTTCAAGCAT CAACAGCAAT TGATTTAATT
GGCAGAAGTA GTGATGGAAA TGTGTTGAGT GGAGTTCGTA GCGAAACTTA TGGAATTGGA
GCAGGTGGAA ATATTGGTAT TTTTACTCGA AAACTTACTC TCCAAGAAGG AAGTGGTTTA
AATAATATAA CTTTGGGAAC TGCTCCTAGT GGCAATATTG AAATTAATGC GAAAACAATT
GAAATATCAG GTTTTTCGCA AGTAAACCCG AATGGAGTTA CTAGCATTGG TACTTTGAGT
TTTGCTTCTG GTAGTGCTGG TGATGTATTC GCTAATAGTG ATAATTTACT AATATCCGGT
GGAGCTTCCC TTTCTTCGGT TACGTTTGGT AGTGGAAGTA GTGGTAAAGT TTCAATTCGC
AATCAAAACA CCACAGTTAT TGGAAACAGC CCTTCAGGAT TTGATAGTGC GATTACTTTA
GCTACATTCG CGTTCGGAGA TAACAAAGAT TTGATACTGG ATACTGGCAA ATTACAAATT
TTAGATGGGG GAAGAATTGG TTCATCTACA CTGTTTGCTG GTAACGGGGG AAATGTAAGT
ATCAATGCAA GTGAAGCAAT CACAATTAGT GGACGTAACG ATAATAACAA CAGTGCAATT
AATTCTTCCG CAACGCGTCT TAATGCACAG TTGCGTCAAT CATTTGGCTT TCCAGATATG
CTGACGGCAA ACGCTGGTAG TCTTAGTATT ACGACACCAA ATCTGATACT GACGGATGGT
GCTACTGTGA CTGTAACGAG TGAAGGTACT GGTAATGCCG GCAACCTTAA CGTTATTGCA
GATATTATCC AATTAAAAAA TCAGGCGTTG ATTCAAGCAC AGACCGAATC TGGTAATGGT
GGAGATATAG ACTTAAAGGT GGGAAGTTTG CTGTTAATGC GCGATCGCAG TAAGATTACA
ACCACAGCAG GCAGTACGGG TAATGGCGGC AATATCAACA TTAATTCACC CACCATTGTT
GGCTTAGAAA ATAGCGACAT CACAGCTAAT GCTGTTCGCG GTAAAGGTGG CAATATTAAC
ATCACTACTC AGGGAATTAT CGGTTTAGAG TACCGTTCGC AACTAACACC AGAAAATGAT
ATTACGGCCA GTTCAGAGTT TGGGGTGAAT GGTACAGTGC AAGTCGATAA CGTCGGTGTA
GATCCGAATT CGGGTTTAGT GGCATTACCA ACCAATTTTA CCGATTCATC CCAAAAAATT
GCTAGTGGAT GTGCAGATAA CAGTGGTAGT AGTTTCGTCG CTACAGGACG GGGTGGTGTA
CCGCAGAATC CCAATCAGGA ATTAAGGAGC GATCGCACCT GGTCAGATAT CCGTGATATG
TCTGAATACC GCAATACTGG CGCAGTGACA GCACAAATTC CCAAATTTCT GGTTCTTGTC
CAAGCCACTG GTTGGCGACA TAATGCTCAA GGAAAAATCG AGTTAGTTGC GGATAAATCT
TCTGCTCAGG TGAAACCAGC ATTAACCTGT GCGCCAGTGG CTCAAAGCTA A
 
Protein sequence
MKLTFVGFGV LSVIWLSAVY NYSVHAQVTP DNTLNTSVTS TTSMSGSNSY TINNGTRVGN 
NLFHSFSQFS ILSGGSASFD NATDIQNIFS RVTGGNISNI DGDISAKGSA NLFLLNPAGV
IFGQNASLNI GGSFITTTAN SIKFADGTEF SALQGADQPL LTMSAPVGLQ MGSNSASIKT
QGRGYANSGS FIVPTPNSTE LQVNPGKTLA LVGGNLQIDG FILNAPEGRV ELGSTNGTGQ
VSLIPNAQGY TLGHEDEQIF GDIQLAKKSL INVSGVNSGS VRLQARNILL TDGSLILAQN
YGYLPGGEIS LQASTAIDLI GRSSDGNVLS GVRSETYGIG AGGNIGIFTR KLTLQEGSGL
NNITLGTAPS GNIEINAKTI EISGFSQVNP NGVTSIGTLS FASGSAGDVF ANSDNLLISG
GASLSSVTFG SGSSGKVSIR NQNTTVIGNS PSGFDSAITL ATFAFGDNKD LILDTGKLQI
LDGGRIGSST LFAGNGGNVS INASEAITIS GRNDNNNSAI NSSATRLNAQ LRQSFGFPDM
LTANAGSLSI TTPNLILTDG ATVTVTSEGT GNAGNLNVIA DIIQLKNQAL IQAQTESGNG
GDIDLKVGSL LLMRDRSKIT TTAGSTGNGG NININSPTIV GLENSDITAN AVRGKGGNIN
ITTQGIIGLE YRSQLTPEND ITASSEFGVN GTVQVDNVGV DPNSGLVALP TNFTDSSQKI
ASGCADNSGS SFVATGRGGV PQNPNQELRS DRTWSDIRDM SEYRNTGAVT AQIPKFLVLV
QATGWRHNAQ GKIELVADKS SAQVKPALTC APVAQS