| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_2111 |
|---|
| Symbol | |
|---|
| ID | 3680369 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 2611509 |
|---|
| End bp | 2613104 |
|---|
| Gene Length | 1596 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637717456 |
|---|
| Product | 2-isopropylmalate synthase |
|---|
| Protein accession | YP_322628 |
|---|
| Protein GI | 75908332 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00973] 2-isopropylmalate synthase, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.556699 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.462239 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTACTA AACCAGAGAG AATTATCATT TTTGATACAA CACTCCGTGA CGGGGAACAG
TGTCCTGGTG CAACACTGAA TATAGATGAA AAGCTGGCGA TCGCCAAACA GTTAGCCCGC
TTAGGTGTAG ATATCATAGA GGCAGGTTTC GCTTTTGCTA GCCCTGGGGA TTTTGAAGCA
GTCCATAAAA TTGCCCAAAC TGTAGGGACG GAAAATGGCC CGGTAATTTG CAGTTTGGCA
AGAGCTAGGC ATGATGATAT CAAAGCGGCA GCCGAAGCTA TTAAACCAGC AGCTAAAGGC
AGGATTCACA CCTTTATTGC TACCTCAGAT ATTCACCTCC AGTACAAGCT GAAAAAAACC
AGACCAGAAG TGATTGCGAT CGCCGAAGAA ATGGTAGCTT ATGCCAAAAG TTTCACCGAT
GATGTGGAAT TTTCCCCGGA AGATGCTGGA CGTTCAGACC CAGAATTTTT GTATCAGGTT
TTAGAGCGAG CGATCGCCGC CGGTGCAACA ACAATTAACA TTCCGGATAC CGTTGGTTAC
ACCACACCAA GCGAATTTGG GGCAATAATT AAGGGCATTA AAGAAAATGT CCCCAACATC
GACCAAGCAA TTATTTCTGT TCACGGACAC AATGATTTAG GCTTGGCAGT TGCCAACTTC
TTAGAAGCAG TTAAAAATGG TGCAAGACAA CTAGAATGCA CCATCAATGG TATTGGTGAA
AGAGCAGGAA ACGCCGCCTT AGAAGAATTG GTAATGGCGA TGCACGTCCG CAGACAATAC
TTTAATCCCT TCTTAGGTAG ACACCCAGAT TCGGAAGAAC CACTCACCAA TATTGACACC
AAGCAAATAT ATAAAACCTC ACGCTTGGTT TCTAATTTAA CAGGAATGTT AGTACAACCC
AATAAGGCGA TCGTTGGGGC TAACGCCTTC GCCCATGAAT CAGGAATTCA CCAAGATGGA
GTTTTGAAAA ACAAACTCAC CTACGAAATC ATGGATGCCC AATTGATTGG CTTAACAGAC
AATCAAATAG TTTTAGGCAA ACATTCTGGG CGTAATGCTT TCCGTACCCG CTTGAAAGAA
TTAGGCTTTG AACTATCAGA AACTGAGTTA AATAAAGCCT TCGTCAAATT CAAAGAAGTC
GCCGATAAAA AGAAAGAAAT TTCTGATTGG GACTTGGAAG CAATTGTTAA TGACGAAATC
CAGCAAGCCC CTGATTTATT CCGCGTAGAG TTGGTACAAG TTTCCTGCGG TAGCAATGCA
CGTCCAACAG CAACAGTTAC CCTCCGCACC CCAGACGGCG AAGAACTCAC CGACGCAGCC
ATTGGTACAG GGCCAGTAGA CGCGGTATAT AAAGCAATTA ACCGCGTGGT CAACGTCCCC
AACCAATTAA TTGAGTTCTC CGTGCAGTCA GTAACAGCCG GGATTGATGC CATTGGGGAA
GTGACAATTC GTTTGCGGTA TGAATCACGA GTATTTTCCG GTCATGCGGC CAACACCGAT
ATCATCGTCG CCTCTGCACA AGCCTACGTT AACGCCCTAA ATCGTTTATA CGCATCCTTG
CAGACTCAAG ATAAGCAAAC AGAAGTAACA GCATAA
|
|---|
| Protein sequence | MTTKPERIII FDTTLRDGEQ CPGATLNIDE KLAIAKQLAR LGVDIIEAGF AFASPGDFEA
VHKIAQTVGT ENGPVICSLA RARHDDIKAA AEAIKPAAKG RIHTFIATSD IHLQYKLKKT
RPEVIAIAEE MVAYAKSFTD DVEFSPEDAG RSDPEFLYQV LERAIAAGAT TINIPDTVGY
TTPSEFGAII KGIKENVPNI DQAIISVHGH NDLGLAVANF LEAVKNGARQ LECTINGIGE
RAGNAALEEL VMAMHVRRQY FNPFLGRHPD SEEPLTNIDT KQIYKTSRLV SNLTGMLVQP
NKAIVGANAF AHESGIHQDG VLKNKLTYEI MDAQLIGLTD NQIVLGKHSG RNAFRTRLKE
LGFELSETEL NKAFVKFKEV ADKKKEISDW DLEAIVNDEI QQAPDLFRVE LVQVSCGSNA
RPTATVTLRT PDGEELTDAA IGTGPVDAVY KAINRVVNVP NQLIEFSVQS VTAGIDAIGE
VTIRLRYESR VFSGHAANTD IIVASAQAYV NALNRLYASL QTQDKQTEVT A
|
|---|
| |