| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_1933 |
|---|
| Symbol | |
|---|
| ID | 3681652 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | - |
|---|
| Start bp | 2402391 |
|---|
| End bp | 2403863 |
|---|
| Gene Length | 1473 bp |
|---|
| Protein Length | 490 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637717274 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_322450 |
|---|
| Protein GI | 75908154 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.100433 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTTG CTATTAATAT CGACCCAGAC GCACCTTTAC CTCTGCATCG CCAAGTTTAT
GAGGAATTAC GTCGGGCTAT TTTGTTAGGA CGGTTAATTT CAGGGGAAAA ACTACCATCT
ACGCGATCGC TTGCTCAATT ACTTGGTGTT TCTCGTGCTA CTGTGACTCA AGGTTATGAG
TTATTGCTGA GTGAAGGTTA TCTAGAAACT ATTGTGGGTT CGGGGACGTT TGTTTGTCGT
CAACTTCCCG ATGAATTACT GAATACTGCA CCAATTGAGT CAAAATTACA ACCAAATAAC
TCACCTGTGC CTTTATCAGC TTATGGTAAA AGTTTGAGTG ATAAAGCGTT TTTATGTATA
CCAGAACAAG CGGTAGAAAT TAGCTTTAGT TATGGACGAC CAGCTTTTGA TAAGTTCCCG
ATAGATTTAT GGCGTAAGTT AATCTCGCGT CATTGCCAAC TTAAACCAAA TGTGCTTGAC
TATACAGATA ATTCCCTGGG ATATCAACCA TTAAGGGAGG CGATCGCTGC TTATCTTTCG
CGCTCCAGAG CCGTTAATTG TCAGGCAGAA CAAATCATTA TTGTTGGTGG TTCTCAGCAA
GGTCTTGATT TAATTACACG TATCTTAATT GACCGTGGTG ATGGAATTGT TGTAGAAGAA
CCGGGTTATT TAGGTGCTAG ACGAGCTTTT TTAGCTCAGG GGGCTAGTCT ATTTCCTGTT
CCTGTGGATC AATCAGGGCT AATAGTCAAT AAGTTGAAAA CAAGTATAAT TCCTAACCTT
AAACTAGTTT ATGTCACTCC CTCCCATCAA TTTCCTACAG GTGCGGTGTT ATCTCTTCCC
CGCAGATTAG AGTTACTGGC TTGGGCGCAG AAAGCAGGGG TGATGATTAT TGAAGATGAC
TATGATAGTG AGTACCGTTA TGGTGAGCGT CCCATACCAG CTTTACAAGG ATTAGATCAG
GGTAACTCAG TTATTTATGT AGGTACATTT TCTAAAGTCC TTTTTCCCGC CTTGCGCTTG
GGTTATTTAG TTTTACCCCA GAATTTAGTA AATATATTTG CCCGTGCAAA ATGGCTGGCA
GATAGGCAAT GTAGTTTACT AGAACAGTAT GCCCTGACTG ATTTTATTAC AGAAGGACAT
CTGGAACGAC ATATAAGAAA GATGCGATCG CTCTACAACC AACGTAGGCA AACTTTAGTA
CAGTCTTTGT TTTCTCATTT TGGCAATAGG GCAAAAATTC TGGGAGAAAA TGCAGGAATG
CACCTCATGG TAAAAATAGA TACTCAAATC AGCGATGATG AAATAGTCCA AAGTGCAGCT
CTTTCCGGTG TCAGTATCGG GGCAGCGTAT CCCCAGTATT TAAAAGATAG CCCTGGTAGT
GAATTTATCT TTGGCTATGC AGAACTCAAT GAACAGCAAA TTCAAGAAGG GGTACGGCGA
CTGGCTAGGG TAATTCATAA TTCAGAAGGC TAA
|
|---|
| Protein sequence | MDFAINIDPD APLPLHRQVY EELRRAILLG RLISGEKLPS TRSLAQLLGV SRATVTQGYE
LLLSEGYLET IVGSGTFVCR QLPDELLNTA PIESKLQPNN SPVPLSAYGK SLSDKAFLCI
PEQAVEISFS YGRPAFDKFP IDLWRKLISR HCQLKPNVLD YTDNSLGYQP LREAIAAYLS
RSRAVNCQAE QIIIVGGSQQ GLDLITRILI DRGDGIVVEE PGYLGARRAF LAQGASLFPV
PVDQSGLIVN KLKTSIIPNL KLVYVTPSHQ FPTGAVLSLP RRLELLAWAQ KAGVMIIEDD
YDSEYRYGER PIPALQGLDQ GNSVIYVGTF SKVLFPALRL GYLVLPQNLV NIFARAKWLA
DRQCSLLEQY ALTDFITEGH LERHIRKMRS LYNQRRQTLV QSLFSHFGNR AKILGENAGM
HLMVKIDTQI SDDEIVQSAA LSGVSIGAAY PQYLKDSPGS EFIFGYAELN EQQIQEGVRR
LARVIHNSEG
|
|---|
| |