| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_1811 |
|---|
| Symbol | ispF |
|---|
| ID | 3681978 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | - |
|---|
| Start bp | 2255933 |
|---|
| End bp | 2256430 |
|---|
| Gene Length | 498 bp |
|---|
| Protein Length | 165 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637717151 |
|---|
| Product | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| Protein accession | YP_322328 |
|---|
| Protein GI | 75908032 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTATGA GTATAAGAAT TGGTAACGGC TACGATATTC ACAGATTAGT GAGCGATCGC
GCTTTGATTT TAGGTGGTGT CCATATTCCC CATGAACTGG GTTTATTGGG ACATAGTGAT
GCGGATGTCC TCACTCATGC CATTATGGAT GCCATGTTGG GGGCATTATC TTTGGGAGAT
ATTGGTCATT ATTTCCCCCC GACTGATCCC CAATGGGCTG GGGCAGATAG TTTAGTTTTG
TTAAATCAGG TCAATGAGTT AATTCGCGCT CAAGGTTGGC GTATAGGTAA CATTGACTCG
GTAGTAGTTG CAGAACGGCC AAAGTTGAAA CCACACATTA AAACTATGCG TGACAAACTA
GCCAATGTTT TGCAATTAGA ACCAAATCAA ATTGGTGTCA AAGCTACAAC TAATGAAAAA
TTAGGCCCTG TGGGACGAGA AGAGGGTATT TGTGCTTATG CTGTTGTCTT GTTGGTAAGT
TCTGATCCGG TTAATTAA
|
|---|
| Protein sequence | MTMSIRIGNG YDIHRLVSDR ALILGGVHIP HELGLLGHSD ADVLTHAIMD AMLGALSLGD
IGHYFPPTDP QWAGADSLVL LNQVNELIRA QGWRIGNIDS VVVAERPKLK PHIKTMRDKL
ANVLQLEPNQ IGVKATTNEK LGPVGREEGI CAYAVVLLVS SDPVN
|
|---|
| |