Gene Ava_1231 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_1231 
Symbol 
ID3683271 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp1516831 
End bp1517700 
Gene Length870 bp 
Protein Length289 aa 
Translation table11 
GC content40% 
IMG OID637716569 
ProductTetR family transcriptional regulator 
Protein accessionYP_321750 
Protein GI75907454 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.00074883 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTAAGA AAAAGGCACA TATAGAAACT AATCATGCCG ACCGCTTGCC GTCAGCAGAA 
AAGGTTGATG CAATTCTCAA CGGTGCGATG CAAGAATTTT TGACCCACGG ATATGCAGCT
ACAACAATGG ATAGAGTGAC AGCCGCAGCC GGAGTCTCGA AAACCACTGT CTACAGCTAC
TTTCAAGACA AAGAAGGATT ATTTGCTGCT TTGATTGAAA AACTAGCCCA GGAAAAATGT
TTTTTAATGC ACAATCCTGA GCTTTTGCAA GGAGAACCCC ATATTGTTCT ACGCCGTTTA
GCAACAAATA TTTTCAATCA AGTAGAGCAA GAACCAGAGT TTTTGAGTTT AGTCAGGCTA
ATTATCGGCG AATCTGGGCG GTTTCCATCC TTAGCAAAAA CCTTTGTCTG CAACATAGAT
AAACAAGCTC TACAGAGGCT AAGTGAATAT TTTACAGAGC ATTCAGAACT AAAATTACCT
GATCCAGAGG TAGCAGCACG TATTTTTCTT GGTACAGTAG TGCATTTTAT AATTCTTCAA
TATATGCTCC ATAGTCAGGA TATCTTGCCA ATGGAGAGCG ATCGCCTGAT TGACAATCTG
ATTAATTTAA TCACTATTAA TCTTTCTCAA AATACTTCTA CTAATCAGTA TTCTGGTACA
AGGCAGAAAT CCCCAAGGCG CAGGCGTACA GCTTCGGGTA AATTCCAGAT GGACTACGCT
TCAGAACCCA AACAGTTAAG GTCCATAAGA TTGACGAATA CAGCCTGGGA ACAATTGGCA
GAATTAGCAG AGAAAAATAA TTTGACTCGC AGTGAAATGA TTGAAATCTT TGCCCGCCAA
GGTTTTTCAG GCAATCACAC TAACTCGTAA
 
Protein sequence
MSKKKAHIET NHADRLPSAE KVDAILNGAM QEFLTHGYAA TTMDRVTAAA GVSKTTVYSY 
FQDKEGLFAA LIEKLAQEKC FLMHNPELLQ GEPHIVLRRL ATNIFNQVEQ EPEFLSLVRL
IIGESGRFPS LAKTFVCNID KQALQRLSEY FTEHSELKLP DPEVAARIFL GTVVHFIILQ
YMLHSQDILP MESDRLIDNL INLITINLSQ NTSTNQYSGT RQKSPRRRRT ASGKFQMDYA
SEPKQLRSIR LTNTAWEQLA ELAEKNNLTR SEMIEIFARQ GFSGNHTNS