Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_1198 |
Symbol | |
ID | 3683297 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | + |
Start bp | 1477851 |
End bp | 1478987 |
Gene Length | 1137 bp |
Protein Length | 378 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 637716535 |
Product | sigma 28 (flagella/sporulation) |
Protein accession | YP_321717 |
Protein GI | 75907421 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATATTG CTGAATTGGG AACAATGGAA ATAATAGAAA GTGTTGTAGA ACATGAAGAA CACTCTCTCG ATGCCTTAGA ACTGATAATA GAAGAAGAAC CCCCAATAAC AGACAATTTA GACTCAGAGG AACGTGATAG CGGGGATGAA ATGGCTGCTG CCCGGCCTTC GGGCTACAAT AAAACCGAGC ATGATGATGC AGTAGGTGCG TTCTTTAAAG AAATGGCACG TTATCCACTG CTAAAACCCG ATGAAGAGGT AGAATTAGCC AGAAGAGTCA GATTTTTAGA AGAAGTTAGA GATTTACAAG CAGATTTGCA ATTGCAACTA GGGCTACATC CAACAAAAGC CCAAGTAGCT GCTCAACTAG AGATAACAGA AAAACAATTA GAAAATCGAT TGTATCAAGG TCGAGTGGCG AAACGTAAAA TGATTCGCTC GAACTTGAGA TTAGTAGTAT CAATTGCCAA GCGTTATCTG AATCGGGGAG TACCTTTTCT AGATTTAATT CAAGAAGGTG CAATGGGATT GAATCGAGCT ACAGAGAAAT TTGACCCCGA TAAAGGATAT AAGTTTTCTA CTTACGCTTA CTGGTGGATT AGACAAGCAA TTACGAGAGC GATCGCTAAT GATGCCAGAA CCATCCGCCT ACCCATCCAT ATTGTAGAAA AACTCAACAA ACTCAAAAAA GCCCAACGGG AACTCAAACA AAAATTCAGC CGCAACCCTT CCGAAGCAGA AATGGCCGAA GCTTTGGAAA TTAGCGTCCC CCAACTGCGC CAACTGCAAC AACTCCGGCG ACAAGCCCTA TCTTTAAACC ATCGTGTCGG TAAAGAAGAA GATACCGAAC TGATGGATTT ATTAGAAGAT GAGGATAACT TATCTCCGGA AGCAAAAATG AACGAAAATA TGATGCGTCA GGAGATTTGG GAAGTTTTAG GTGATGTCCT CACTCCCAGA GAAAAAGACG TAATTTCTCT ACGCTATGGT TTGACAACTA GCGAACCTTG CACCCTGGAG GAAGTCGGAA ATATGTTCAA CTTATCCCGC GAACGAGTCC GCCAAATTCA AAGCAAAGCC ATGCGTAAAT TACGCCGTCC TCACATAGCC AAACGTCTGA AGGGTTGGTT AATTTGA
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Protein sequence | MNIAELGTME IIESVVEHEE HSLDALELII EEEPPITDNL DSEERDSGDE MAAARPSGYN KTEHDDAVGA FFKEMARYPL LKPDEEVELA RRVRFLEEVR DLQADLQLQL GLHPTKAQVA AQLEITEKQL ENRLYQGRVA KRKMIRSNLR LVVSIAKRYL NRGVPFLDLI QEGAMGLNRA TEKFDPDKGY KFSTYAYWWI RQAITRAIAN DARTIRLPIH IVEKLNKLKK AQRELKQKFS RNPSEAEMAE ALEISVPQLR QLQQLRRQAL SLNHRVGKEE DTELMDLLED EDNLSPEAKM NENMMRQEIW EVLGDVLTPR EKDVISLRYG LTTSEPCTLE EVGNMFNLSR ERVRQIQSKA MRKLRRPHIA KRLKGWLI
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