| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_0926 |
|---|
| Symbol | |
|---|
| ID | 3681300 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 1120359 |
|---|
| End bp | 1122281 |
|---|
| Gene Length | 1923 bp |
|---|
| Protein Length | 640 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637716260 |
|---|
| Product | penicillin-binding protein 1A |
|---|
| Protein accession | YP_321445 |
|---|
| Protein GI | 75907149 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
|---|
| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCGTCTA GGACTTTTGA ACAAAAGCAA CCGCAACGTC GTACTTCGTC GGGATTTGAG
TTTTTTAAAG GAGTAGGCCA GATAGCTGGC GGCACTCTTT TATCACTGAC GATGTTGACA
AGCTCCATTG TAGCTGGAGG GCTTGTTGGT TTAGCGATCA GTTTCCGCAA TTTACCAGAT
GTCAGACAGC TACGTAATTT CTTCCCATCG GAAACAACTT ACATCTACGA CATTAAAGGC
AAACTACTAG CTAGTGTCCA CGGGGAAGCC AACCGCGAAG TTGTACCGTT AGATCGAATT
TCCCCCAATC TGAAACGGGC TGTACTCGCC AGTGAAGATA GTCATTTCTA TTATCACCAC
GGTATTAACC CCACTGGTGT AGGGCGTGCT GTCGTCACTA ACTTGGTGGC GGGTGGTGTA
AAAGAAGGTG GTTCTACCAT CACCATGCAG TTGGTGAAGA ACCTCTTTTT GACTCGTAAA
CGCGCTTTTA CTAGGAAGTT AGCGGAAGGA GTGCTGGCAA TCCGCTTAGA ACAAATTCTT
ACTAAAGACC AAATTTTAGA AATGTACCTC AATCAAGTGT ATTGGGGTCA CAATAATTAT
GGTGTGCAAA CAGCATCACG TAGTTACTTT AATAAGTCAG CCGAGAATTT AACGATCGCT
GAATCGGCGA TGATGGCGGG TTTAATCCAA GCACCAGAAG AATTTAGCCC CTTTGCCAGT
AAAAAATTGG CAAAACAAAA ACAAAAAGAA GTACTGGGGC GGATGCTGGA ATTGAACTGG
ATTACCCAGA AAGAATATGA TGACGCTCTC AAGGAAGAAC TTACATTCGG CAGAATTAGG
TCATTTCAAG GTAGTGCGTT GCCATATATA ACCAACACTG TGTCCCAGGA ACTAGCGAAA
AAGTTTGGTC GTGAAACCTT GTTGAAGGGT GGTATGCGGG TACAAACTAC TGTCGATGCT
AATTTCCAAA CAATGGCAGA AGACACTGTG AAGAAATGGC ATAAAACTCT ACTTGGTGAA
GGATTAAGTA GAAATCAAAT TGCCCTGGTA GCTATTGACC CCAGGACTCA TTTTGTCAAA
GCCCTAGTCG GTGGCGTAGA CTCTAGAGCT AGTGAGTTTA ACAGGGCTAC ACAAGCTCTA
CGTCAACCGG GATCTTCCTT TAAACCGTTT GTTTACTATG CTGCTTTTGC TACTGGTAAA
TTTGCACCTG ATAGCACGGT GATAGATGCC CCAGTGAGAT ATCGTGATGG TGATAATTGG
TATAGTCCTA GAAACTATGA TGGTGGCTTT AGCGGTGCCA TGTCCATTCG CACTGCCCTA
GCACAATCAC GTAACATTCC CGTGATTAAA CTGGGTAAAA CCATCGGTAT GAATAAAGTT
GTGGAAACTT GCCGCATTTT AGGAATCATG AGTCCGATGG AACCTGTGAC CTCTCTGCCG
CTAGGGGCGA TTGGTGTCAC GCCACTGGAA ATGGCTAGTG CTTATGCGAC TTTTGCCAAT
TATGGTTGGC AATCACCACC GACAGTGATT GCGCGGATTA CTGATAGTAG TGGCAATGTG
TTGTTAGATA ATACTCCCAA ACCCCAGTTA GTGTTAGATC CTTGGGCATC GGCAGCGATT
ATCGATGTGA TGCGATCAGT TGTTACTGAT GGTACTGGTA AAGGTGCTGC GATAGATCGC
CCGGCTGCGG GGAAAACGGG TACAACCTCA TCTGAAAAAG ATATTTGGTT TGTGGGTACT
GTACCGCAGT TAACAACTGC TGTCTGGATA GGCAGGGATG ACAACCGGCA GCTAGCCAGT
GGCGCAACTG GTGGTGGTAA GGTTGCTCCT ATCTGGCGTG ATTTTATGAC TAAGGCACTC
AAGGGCGTAC CAGTGCAGAA CTTCAAGCCG CCTTCTCAAT TTCCGCGTCC TAAGGCGAAT
TAA
|
|---|
| Protein sequence | MSSRTFEQKQ PQRRTSSGFE FFKGVGQIAG GTLLSLTMLT SSIVAGGLVG LAISFRNLPD
VRQLRNFFPS ETTYIYDIKG KLLASVHGEA NREVVPLDRI SPNLKRAVLA SEDSHFYYHH
GINPTGVGRA VVTNLVAGGV KEGGSTITMQ LVKNLFLTRK RAFTRKLAEG VLAIRLEQIL
TKDQILEMYL NQVYWGHNNY GVQTASRSYF NKSAENLTIA ESAMMAGLIQ APEEFSPFAS
KKLAKQKQKE VLGRMLELNW ITQKEYDDAL KEELTFGRIR SFQGSALPYI TNTVSQELAK
KFGRETLLKG GMRVQTTVDA NFQTMAEDTV KKWHKTLLGE GLSRNQIALV AIDPRTHFVK
ALVGGVDSRA SEFNRATQAL RQPGSSFKPF VYYAAFATGK FAPDSTVIDA PVRYRDGDNW
YSPRNYDGGF SGAMSIRTAL AQSRNIPVIK LGKTIGMNKV VETCRILGIM SPMEPVTSLP
LGAIGVTPLE MASAYATFAN YGWQSPPTVI ARITDSSGNV LLDNTPKPQL VLDPWASAAI
IDVMRSVVTD GTGKGAAIDR PAAGKTGTTS SEKDIWFVGT VPQLTTAVWI GRDDNRQLAS
GATGGGKVAP IWRDFMTKAL KGVPVQNFKP PSQFPRPKAN
|
|---|
| |