| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_0885 |
|---|
| Symbol | |
|---|
| ID | 3681571 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | - |
|---|
| Start bp | 1081570 |
|---|
| End bp | 1082124 |
|---|
| Gene Length | 555 bp |
|---|
| Protein Length | 184 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637716219 |
|---|
| Product | tripartite ATP-independent periplasmic transporter DctQ |
|---|
| Protein accession | YP_321404 |
|---|
| Protein GI | 75907108 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4665] TRAP-type mannitol/chloroaromatic compound transport system, small permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.000000127189 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | TTGGAAAAAC TGTTAAAAAT ATCGAGAATA ATTGATGCCT TTACAGAACG CGTAGGTCGA
TATACCAGTT GGTTGGTATT AGTCATGGTC ATACTAGGCG TGTGGAATGT TGTCGGGCGA
TATTTAGGGC GCATTAGCGG TAACAACCTC ACATCCAACG CTTATATAGA AGCTCAGTGG
TATATTTTCG ATGTAATTTT TTTCTTAGGG GCAGCTTATA CCCTGAAGCA TAACGAACAC
GTCCGCGTTG ATATTTTTTA TAGTAATTGG CAACGTCGGC GTAAAGCGAT CGCAGACTTT
CTCGGAACCA TATTTTTTCT CATTCCCTTC AGCATCATAG TGATTTTTGT TTCTTGGGAT
ACTATCGTCG CATCATGGCA GATTGGTGAA TTATCGCCCG ATCCTGGTGG GTTGCCCCGC
TACCCCATTA AAGCCATGAT TATCGTTGGC TTTGTGTTGT TAATTATTCA AGGAATTTCC
CAAGCAATTA AAAACTTAGC AATTATCCAA GGCAGACTAG AACCCCAGGA GGAAAATCAT
GACGCTGGCT TATGA
|
|---|
| Protein sequence | MEKLLKISRI IDAFTERVGR YTSWLVLVMV ILGVWNVVGR YLGRISGNNL TSNAYIEAQW
YIFDVIFFLG AAYTLKHNEH VRVDIFYSNW QRRRKAIADF LGTIFFLIPF SIIVIFVSWD
TIVASWQIGE LSPDPGGLPR YPIKAMIIVG FVLLIIQGIS QAIKNLAIIQ GRLEPQEENH
DAGL
|
|---|
| |