Gene Ava_0173 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_0173 
Symbol 
ID3683131 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp227079 
End bp228119 
Gene Length1041 bp 
Protein Length346 aa 
Translation table11 
GC content43% 
IMG OID637715500 
ProductWD-40 repeat-containing protein 
Protein accessionYP_320694 
Protein GI75906398 
COG category[R] General function prediction only 
COG ID[COG2319] FOG: WD40 repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.00199639 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0808498 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTACGGC CATACTTGAT ATTACTATTT ATGGGGGTTG TGGCTCTGCC TGTGAATCTA 
GGGTCAGGGC TAAGGGTAAA TGCGGCGGAT ACGGTGCAAG TTACACCCAA CCCAGAACCA
ACAACAGGAT TTACCAATCC TAGACTCCTG CACAGCCTCA ACGCCCATTC AGGGAGGGTA
AAATCTTTAA CTTTTAGCCC AGATAGTCGG ACTATCTTCA GTGGAGGGGC TTATAATGAT
GGCATTATTC GGCTGTGGAA CTCAACAACT GGTAAAAGAG TAGGAACCAT CAACAAAGCG
CAAAAAAATG CGGTGGAGTC TTTAGTGATT TCCCCTGATG GACAAACTTT AGCCAGTTCT
GGCAGTGACA ATATTATTAA TCTGTGGAAT CTTAAAAATA ATCAATTTAC ACGCTCATTT
GTAGGACATA CCGCTAGTGT CATGTCCTTA GCTGTATCTT CAGATGGTAA GGTTCTTGTT
AGTGGTGCTT TAGATGGGAT TCGGGTGTGG GATTTGCTCC AACAACGCCC ATTATCTACT
TTAGTGCGCT TTGATAATAG AATTGATGCC CTGGCAATGA GTTCTGACGG TCAAACTCTG
GCTAGCGGTG ACACAAAAGG TGTAATTAAA CTGTGGAATT TAAGTACAGG TAAATTAATT
CGGGAATTTA CAGCCCATTC TGGTACAGTT ACGGATATTG TCTTTACACC AGATGGACAA
AATTTAATTA GTTGCAGTAG CGATCGCACT ATTAAAGTTT GGCATATCCC ATCCGAAAAA
CTCAGCCGCA CTCTCACAGG TCATAATAAT TGGGTAAATG CGATCGCTAT TAACCGCGAT
GGTAAAACTC TGGCTAGTGC TGGTAGAGAT GGAATTAAAC TCTGGGATTT ATCGACTGGT
GAGTTATTAA ATACACTGAT TGGGCATAGT GATTGGGTAA GTGCGATCGC TTTTAGTCCA
GATGGTAAAA CTCTTGCCAG TGGAGGATTT GACGGCAGAA TTAGTATTTG GGGTAATCCA
CCAGTTACAG TTCGTAAGTA A
 
Protein sequence
MVRPYLILLF MGVVALPVNL GSGLRVNAAD TVQVTPNPEP TTGFTNPRLL HSLNAHSGRV 
KSLTFSPDSR TIFSGGAYND GIIRLWNSTT GKRVGTINKA QKNAVESLVI SPDGQTLASS
GSDNIINLWN LKNNQFTRSF VGHTASVMSL AVSSDGKVLV SGALDGIRVW DLLQQRPLST
LVRFDNRIDA LAMSSDGQTL ASGDTKGVIK LWNLSTGKLI REFTAHSGTV TDIVFTPDGQ
NLISCSSDRT IKVWHIPSEK LSRTLTGHNN WVNAIAINRD GKTLASAGRD GIKLWDLSTG
ELLNTLIGHS DWVSAIAFSP DGKTLASGGF DGRISIWGNP PVTVRK