| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apre_1592 |
|---|
| Symbol | |
|---|
| ID | 8398404 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anaerococcus prevotii DSM 20548 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013171 |
|---|
| Strand | - |
|---|
| Start bp | 1731491 |
|---|
| End bp | 1732885 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 644995956 |
|---|
| Product | sugar (Glycoside-Pentoside-Hexuronide) transporter |
|---|
| Protein accession | YP_003153334 |
|---|
| Protein GI | 257067078 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2211] Na+/melibiose symporter and related transporters |
|---|
| TIGRFAM ID | [TIGR00792] sugar (Glycoside-Pentoside-Hexuronide) transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00442608 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAAAA ATGTAAAGCC TTTTGGCTTA AAAGATAAGA TTGGTTATGC AGCAGGAGAT
GTTGCAAACA ACTTCACCTT TACCCTTGTT AGTAGTTTTC TGATGATATT TTATACTAAC
GTATGGGGGA TAGATCCAAA ACTTGTTGGA GGATTATTCT TTCTTTCGAG AATAATTGAT
GCCTTTACTG ATGTAGGAAT GGGAACTATC GTAGATAAGT TTACAGGAAA TAAGGACGGA
AAGTTTAGAC CATTTATCAA ATGGGGAGCG ATACCAGTAG CTATAGCAGG ATTCTTGCTC
TTCCAATCAG GACTTAAAGA TTTACCAATG GGAACAAAAA TAGTGATAAT GTATGCAACC
TACATCCTTT GGGGATCACT TTGCTACACC TTCATTAACA TCCCATATGG ATCAATGGCT
TCAGCAATAA CATCTGATGC AGATCAAAGA ACAGAGCTTT CAACATTTAG AACTCTAGGA
GCAACAGTAG CAGGTCTTAT AATTGGATTT GTTACTCCAT ATCTAATTTA TCAGAAAGTT
CCTGGTCAAG CTGATATCCT ATTAGAAAAT AGATTTCCGC TTGTAGCTGG AATCTACGGA
ATACTAGCTA TTATTTCTTA CTTTATTTGT TACTCCTTCT GTACTGAAAG AGTTGACATA
GAAAGAGAAT CAGCTGGTCC AAAAGAAAAC GCCCTTAAGG GAATCGGAAA TGTAATTAGT
AAAAGATCTC TACTATCAAT CATAGTAGTA TCTATATGCC TCCTTCTTGG AATGCTTTTA
GTTGGTTCAA TGAATATATA TGTATATTCT ACCTACTTCC AAGATACAAC TGGAATGGCT
CTAGCTGGTC TTTGTGGTAC AGTTCCAATG CTATTTACAG CTCCAATGGC TATGAAACTT
GGACAAAATA TTGGTAAGAA AGAAGCATCA TCTATTGGAC TTATAGGTGC AGGTGTAACT
TACTTTATAC TTTTCATCTT GAAACTTGAA AATATGTACC TATTCCTAGC TGGAACTGTT
ATAGCTTATA TATTCCTAGG AATATTTAAC ACCCTAACTT GGGCCATGAT TACAGACGTA
ATCGATGACT TGGAAATCAA AAATGGAGTA AGAGATGACG GAAAAGTTTA TGCTATTTAC
TCATTTGCAA GAAAGTTAGG CCAAGCCTTT GCTGGAGGAC TTGGTGGATT TGCAGTAGCT
TCAGTAGGAT ATGTTGCAGG AGCTGCGAGT CAAACAGCAG AGGTTGCTCA GGGAATATAT
AATGTAGCGA CGCTAATACC AGCTATAGCC CTAGGACTTG GTGGCTTAGT AGTCTTTTTA
ATATATCCAC TCAATAGAAA AACTGTAGAG AAAAATAATA AGACTCTTGC AGAAAAAAGA
GCTCAATTAA AATAA
|
|---|
| Protein sequence | MQKNVKPFGL KDKIGYAAGD VANNFTFTLV SSFLMIFYTN VWGIDPKLVG GLFFLSRIID
AFTDVGMGTI VDKFTGNKDG KFRPFIKWGA IPVAIAGFLL FQSGLKDLPM GTKIVIMYAT
YILWGSLCYT FINIPYGSMA SAITSDADQR TELSTFRTLG ATVAGLIIGF VTPYLIYQKV
PGQADILLEN RFPLVAGIYG ILAIISYFIC YSFCTERVDI ERESAGPKEN ALKGIGNVIS
KRSLLSIIVV SICLLLGMLL VGSMNIYVYS TYFQDTTGMA LAGLCGTVPM LFTAPMAMKL
GQNIGKKEAS SIGLIGAGVT YFILFILKLE NMYLFLAGTV IAYIFLGIFN TLTWAMITDV
IDDLEIKNGV RDDGKVYAIY SFARKLGQAF AGGLGGFAVA SVGYVAGAAS QTAEVAQGIY
NVATLIPAIA LGLGGLVVFL IYPLNRKTVE KNNKTLAEKR AQLK
|
|---|
| |