| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apre_1135 |
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| Symbol | |
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| ID | 8397923 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anaerococcus prevotii DSM 20548 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013171 |
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| Strand | - |
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| Start bp | 1219236 |
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| End bp | 1221044 |
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| Gene Length | 1809 bp |
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| Protein Length | 602 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 644995481 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD subfamily |
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| Protein accession | YP_003152882 |
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| Protein GI | 257066626 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00130789 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAGCG ATGACAGTAA GTTGCTCGAT GATGATGTTC TAAAAGAAAT AATAGAAGAA
TTTCAGTCTA TGAGCGAGTC TCAAGATGGA TTGATTACCT ATTCTCAGAT AAATACATTC
GAAAACTTCA AGGAAATGGA AGATGAGAGC AAGAAGTTTG TTATAAATCA GATTATAAGT
TTAGGCATAG AAATCGTTGA AAAATCTGAA ACAGTCCTTG AAGAAGATGA AGAAGCGGAT
GATTTAGATG ATGAAATAGA TGATGACGAC GAAGACGATA TCGACGAGAA GAAGATAGAA
GAAGATATCA AGAAATCTGT GGATATTATG GCTGGAGTCA AGGTTGATGA CCCTGTAAAG
ATGTATCTTA AGGAAATAGG CAAGGTAGAC CTTCTTACAG CGACAGAAGA AATAATACTC
GCTCGTAGGA TGGAAATGGG AGAGATTGCA AGGAAGAAAC TCGAAGGAGT TAAGTTTAAC
AAGCAAAACA AGACCAAACT CGCCAATGAT ATCTTCTTCG GAGATCTAGC CAAGATACTC
AAAGTATCCA ATGAAAAGAT TGTAGAAAAT GGAAGTCTTG ATAAGAAAAG CTACGAAGAG
ATAAGAGGGC TTATCAGCAT GGGCGATCTT TTTAGAGAAA TTATGGACAA AGATATGGAT
AAAGAAGCCC TAGAGGAACT CAAAGCAAGG GTTTTGATTT GTAATATAGC AGAAAATGCT
GTAAGCGACA ATGTCTTAGA TAGAAGTGAG GCCAATTCTC TTTGTGATCT TTTTGATTCA
TTTGACCATA TGCTTAACAT TACCGAGTCA GATGAGATAG TTAATTTAAT CTATTTATCA
TTTAATGATA TCCTATCAAA GGCTGCCAAT AAGGAACATA TCAAGACAAA CGATAGTATG
ATTCTAGAAG ATTTCATAAT TACTAGCCAG AGGGCTAAGA AGATTTCTGA AAACATAGCC
TTAGATAAAG ATGAGCTAAT GGAGATAGAA GAAACTATCG CCCTAAGAGA TCTTGCCTAC
AAAGTGATAA ATGACGAAGA CTTAAGCGAT GAAGATATAC TAGATTTAAG AAGAGCTGTT
CTTAATTCTA AAAGAGCTAA AAAGAAACTT GCAGAAACTA ACCTTAGACT TGTAGTTTCT
ATTGCCAAAA AATATGTCGG TCGTGGCATG AGCTTTTTAG ACCTTATCCA AGAAGGAAAC
ATGGGACTTA TGAAGGCAGT TGATAAGTAC GACTACAACA GGGGCTTCAA GTTCTCAACT
TATGCGACCT GGTGGATTAG ACAGGCTATT ACTCGTGCTA TAGCAGATCA GGCAAGGACT
ATAAGAATTC CAGTTCACAT GGTAGAAACA ATAAACAAAC TCGTAAGAAT CCAAAGGCAG
CTAGTTCAGG ATTTGGGTAG GGATCCTTCC AATGAAGAGA TTGCCGAGCA GATGGGACTA
GAAGTAGAGA AGGTTCAAGA GATAAGAAAA ATATCCCAAG AACCAGTTTC CTTGGAAACT
CCAATAGGAG AAGAGGACGA CTCCCACTTA GGAGATTTTA TAGAAGATGA TAGTGCGATC
GACCCTGGTG AAGCTGCAAA CTACACTATG CTCCGTGAGC AATTAAACGA TGTTTTATCT
TGCTTGGGTG CTAGGGAAAA ACGTGTCCTC CAATTAAGGT TTGGCCTAAT CGATGGAACA
CCAAGGACCC TCGAAGAAGT AGGCAAGGAA TTTGACGTAA CTAGGGAGAG GATAAGACAA
ATAGAGGCCA AGGCCCTAAG AAAGCTTAAA TCTCCGAACA AGAGTGAATT ATTGAAAGAT
TTTTTATAA
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| Protein sequence | MTSDDSKLLD DDVLKEIIEE FQSMSESQDG LITYSQINTF ENFKEMEDES KKFVINQIIS
LGIEIVEKSE TVLEEDEEAD DLDDEIDDDD EDDIDEKKIE EDIKKSVDIM AGVKVDDPVK
MYLKEIGKVD LLTATEEIIL ARRMEMGEIA RKKLEGVKFN KQNKTKLAND IFFGDLAKIL
KVSNEKIVEN GSLDKKSYEE IRGLISMGDL FREIMDKDMD KEALEELKAR VLICNIAENA
VSDNVLDRSE ANSLCDLFDS FDHMLNITES DEIVNLIYLS FNDILSKAAN KEHIKTNDSM
ILEDFIITSQ RAKKISENIA LDKDELMEIE ETIALRDLAY KVINDEDLSD EDILDLRRAV
LNSKRAKKKL AETNLRLVVS IAKKYVGRGM SFLDLIQEGN MGLMKAVDKY DYNRGFKFST
YATWWIRQAI TRAIADQART IRIPVHMVET INKLVRIQRQ LVQDLGRDPS NEEIAEQMGL
EVEKVQEIRK ISQEPVSLET PIGEEDDSHL GDFIEDDSAI DPGEAANYTM LREQLNDVLS
CLGAREKRVL QLRFGLIDGT PRTLEEVGKE FDVTRERIRQ IEAKALRKLK SPNKSELLKD
FL
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