Gene Apre_0597 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApre_0597 
Symbol 
ID8397377 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnaerococcus prevotii DSM 20548 
KingdomBacteria 
Replicon accessionNC_013171 
Strand+ 
Start bp694434 
End bp695504 
Gene Length1071 bp 
Protein Length356 aa 
Translation table11 
GC content40% 
IMG OID644994954 
Product1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 
Protein accessionYP_003152360 
Protein GI257066104 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAAAGA AAACTAAGAA GATTTATGTA GGAGATGTTG CAGTAGGAGG CGACTCTCCT 
ATTTCTGTTC AATCAATGAC AACAGCAAAG ACAAGCGATA TCGAAAAGGT AGTAGGGCAG 
ATCAATGCCC TAGAAGAAGC GGGTTGCGAT ATAGCAAGAT CTGCTATTAA CTCCATAGAA 
GATGCCAAGG CAATTGTTGA GATTAAGAAA AGAACTAATA TACCACTTGT TGCAGACATT 
CAGTTCGACT ATAAGCTTGC CCTTGCAGCG GTAGAATATG GTTGTGATTG TCTAAGATAC 
AATCCTGGTA ATATAGGAGG TAGTGATAAG GTTAAGCTTC TTGTAGATAA GTGCAAGGAG 
AAAAACATCC CTATAAGGAT TGGGGTAAAC TCAGGCTCTA TATCGAGAGA AATCGTAGAT 
AGATTCGGTG GAGTAAACGC AGACTCCCTA GTAGCAAGTG CCCTAGAGGA AGTAAAGATC 
CTAGAGGAGA TGGACTTTAC CGATATCAAA ATTTCTGTTA AGTCAAGCGA TGTAAATACA 
ATGATCGATG CCTACAGGAA ATTATCAGAT AAGGTTGACT ACCCACTCCA CCTTGGTGTA 
ACAGAAGCAG GTCCCTTGTA CCAAGCCCTT GTCAAATCCT CTATCGGCAT AGGTTCTTTA 
CTAAAAGATG GGATAGGAGA TACTATCAGA GTTTCAATCA CAGGAGATAT TCTAGAAGAA 
GTTAAGGCAG GAAAGGCAAT CCTTAAGGCC CTTAACCTAA GACGAGATGG CCTAGATATA 
GTATCTTGTC CAACATGCTC AAGAACTACA GTAAATCTTC ATGAAATTGT AAAGGAAGTA 
GAAGAGAAGA GTGGGGGTCT AGATATCTCT GCTAAGGTTG CCATCATGGG TTGTCCAGTA 
AATGGACCAG GAGAGAGTAA GGAAGCAGAA TATGGAATTT CTGCAGCAAA TGGCATGGGC 
TTTCTCTTTA AGAATGGCAA GACTATTAAG AAAGTTAGAG AAGATGAGAT AGTAGATACT 
TTGATAGAGA CTCTCAAAGA AAGCAAAGAA GATGAGAATA GACCTTCATA A
 
Protein sequence
MRKKTKKIYV GDVAVGGDSP ISVQSMTTAK TSDIEKVVGQ INALEEAGCD IARSAINSIE 
DAKAIVEIKK RTNIPLVADI QFDYKLALAA VEYGCDCLRY NPGNIGGSDK VKLLVDKCKE 
KNIPIRIGVN SGSISREIVD RFGGVNADSL VASALEEVKI LEEMDFTDIK ISVKSSDVNT 
MIDAYRKLSD KVDYPLHLGV TEAGPLYQAL VKSSIGIGSL LKDGIGDTIR VSITGDILEE 
VKAGKAILKA LNLRRDGLDI VSCPTCSRTT VNLHEIVKEV EEKSGGLDIS AKVAIMGCPV 
NGPGESKEAE YGISAANGMG FLFKNGKTIK KVREDEIVDT LIETLKESKE DENRPS