| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1336 |
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| Symbol | |
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| ID | 8414221 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 1502713 |
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| End bp | 1504410 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 645022933 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_003180351 |
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| Protein GI | 257785134 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | [TIGR02403] alpha,alpha-phosphotrehalase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00360472 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCAGGGC AATCTTCACG AGTAACAAGC AATCCCAAGG GCGCTTATAC GCGCGCTGAG
TTTCTCGGCA CCAAGGTTGT GTATCAAATC TACGTCCGCT CCTTTAACGA TTCAAACGGA
GACGGCATCG GAGACCTTCC CGGCATCACG CAACGTCTTG ACTACCTGCA AAAACTCGGC
GTTGACTATC TGTGGCTTAC TCCGTTTTTT GTTTCACCCC AACATGACAA TGGCTACGAC
GTTGCAGATT ACCGCAACGT CGAGCCTCTC TTTGGCACCA TGGCTGACTT CAACGAACTT
TCAGCCGAAG CAAAAAAGCA CGGTATCAAG CTGATGCTCG ACATGGTCTT TAACCACACA
TCAACCGAGC ATCCATGGTT TCAGCGGGCA CTTAGCGGCG ATCCTCAATA CCTTGCCTAC
TATACCTTTG TCGATGGCAA CCCCAACACG CCGCCAACAA ACTGGAAGTC CAAGTTTGGC
GGAAGCGCAT GGGAGTGGGT TCCCACACTT CATAAGTGGT ATCTCCATCT CTTTGACGCC
TCACAGGCGG ATCTCAACTG GGACAACCCA AGCGTCCGAG CCGAGCTTGC CGACATAGTG
AGTTTCTGGC ACAACAAAGG CGTTGATGGT TTTCGCTTTG ACGTTGTTAA TCTCATTTCC
AAGCCAGATG TCTTTGAGGA CGACGCCATA GGAGACGGCA GGCGCTTTTA CACCGACGGG
CCACATGTCC ACGAATACCT GCAGGAACTC GTCAAGCGCG GTGGTATCGA CGGGCTGATG
ACCGTCGGTG AAATGAGCTC CACCTCAATT GAAAACTGCA TACGCTATTC CAATCCGGCT
GACCATGAGC TTGCCATGAC CTTCTCGTTT CATCACCTTA AGGTTGATTA CCTCAACGGA
GACAAGTGGT CGCTCAAAGA GCCGGATATC GGCAAGCTTC GTGAGCTGTT GAAATCGTGG
CAAGAACAGA TTACGGCAGG TGGAGGCTGG AATGCGCTGT TTTGGGCCAA TCACGATCAG
CCTCGTCCGA ATTCTCGCTT TGGCGATACC GAGCACTACT GGGAAATGTC CAGCAAACTG
CTTGCCGTCA CCGCACATCT TCTGCGCGGA ACTCCCTATA TTTACCAGGG AGAAGAGCTG
GGTATGACCA ATGCGGGATT TACCAATATC ACACAGTATC GAGACGTGGA GTCCCTCAAT
TACTTTAAGA TCCTTCAGGA TCGGGGCTGC TCCCCCAAAG AAGCGCTCCA TATCATCTCC
GAGCGCTCCC GCGACAATGG GCGCACACCC GTTCAATGGG ATGCCTCAAA AACCGCAGGT
TTCACTTCCG GTACACCGTG GATTGGCATT CCCGACAACC ACACCATCAT CAATGCTGCT
GCAGAAGTTG GCGATCCTGA CTCGATATTC TCCTTCTATC AAAAGCTCAT TGTTCTTCGA
AAAACTCATC CCGTTATCAG CGAGGGAGAT GTTTGCTTTA TCGACTCCGC TGGCGAGAAG
GTCATTGCCT ACGAGCGTAC CTTGGATAGC TGTTGCGTGC GCGTCTTTGC AAACTTCTCT
GACCAAAAGG TTCGCTGTGC GCCGAAAGCT GAAATCGATG GGTCTGACGT CCTTATTGGT
AACTATCCCA ACACCGTAAC CGATGCAGAT GCGCTCATAC TTCGTCCTTT TGAGGCACGA
GCCTTTATCT GGGAATGA
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| Protein sequence | MSGQSSRVTS NPKGAYTRAE FLGTKVVYQI YVRSFNDSNG DGIGDLPGIT QRLDYLQKLG
VDYLWLTPFF VSPQHDNGYD VADYRNVEPL FGTMADFNEL SAEAKKHGIK LMLDMVFNHT
STEHPWFQRA LSGDPQYLAY YTFVDGNPNT PPTNWKSKFG GSAWEWVPTL HKWYLHLFDA
SQADLNWDNP SVRAELADIV SFWHNKGVDG FRFDVVNLIS KPDVFEDDAI GDGRRFYTDG
PHVHEYLQEL VKRGGIDGLM TVGEMSSTSI ENCIRYSNPA DHELAMTFSF HHLKVDYLNG
DKWSLKEPDI GKLRELLKSW QEQITAGGGW NALFWANHDQ PRPNSRFGDT EHYWEMSSKL
LAVTAHLLRG TPYIYQGEEL GMTNAGFTNI TQYRDVESLN YFKILQDRGC SPKEALHIIS
ERSRDNGRTP VQWDASKTAG FTSGTPWIGI PDNHTIINAA AEVGDPDSIF SFYQKLIVLR
KTHPVISEGD VCFIDSAGEK VIAYERTLDS CCVRVFANFS DQKVRCAPKA EIDGSDVLIG
NYPNTVTDAD ALILRPFEAR AFIWE
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