| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1334 |
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| Symbol | |
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| ID | 8414219 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1500260 |
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| End bp | 1500979 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 645022931 |
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| Product | transcriptional regulator, GntR family |
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| Protein accession | YP_003180349 |
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| Protein GI | 257785132 |
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| COG category | [K] Transcription |
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| COG ID | [COG2188] Transcriptional regulators |
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| TIGRFAM ID | [TIGR02404] trehalose operon repressor, B. subtilis-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00015702 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000248139 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGAAGGCAA TTTATGATGA GATTTATAGG AATCTTTTAG GAAAAATAGA GCGAGGAGAA
TATCCCTATC AGACCTATAT TCCATCTGAG GCGAATCTTA TAAAAGAATA CAGTTGCTCT
CACAATACGC TCAGAAAGGC AATTGCACTT TTAACGCAGC AAGGGGCACT GCAGCCCGTA
CATGGCAAAG GGGTGCGCGT TATTTACCAA AAGCGCCCGC GAGCTCTTTT TGAGCTGGGA
GGTATTGAAA CATTTCAAGA GGCATCCAAG CGCAATCAAC TCGATACGGA AACACGGGTT
CTCAAGTTTG AACGTATTGT TGCCGATAAA GACTTCGCAC GCTACACCGG ATTTGGTGAG
GGCGATGAGC TTTTATATGT TGTTCGAGTG AGGGTTGTAG GCTCTAAAGC ATCGATTCTT
GACTGCAATT ATTTCCGAGC AAGTCTTGTA CCAGGCTTAA CTCCTGATAT AGCTCAGTTT
TCAATCTATG ACTATATCGA GAAGACCCTC AATATGCAGA TTGCAACCAG CAAACGAACC
GTTACCGTTG AGCGTGTTAC CCGAGAAGAT CAAGACTGTC TCGATCTTGA CGGTGCAGAT
TACCTGGCCG TGGTAACCGG GCAAACATTC AATTTCCAAG GCGAGATGTT TGAGTTTACG
CAGTCAAAGC ACCGTCCAGA TTACTTCTCG TTTTTTACGG TTGCTCGTCG CGAGATATAG
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| Protein sequence | MKAIYDEIYR NLLGKIERGE YPYQTYIPSE ANLIKEYSCS HNTLRKAIAL LTQQGALQPV
HGKGVRVIYQ KRPRALFELG GIETFQEASK RNQLDTETRV LKFERIVADK DFARYTGFGE
GDELLYVVRV RVVGSKASIL DCNYFRASLV PGLTPDIAQF SIYDYIEKTL NMQIATSKRT
VTVERVTRED QDCLDLDGAD YLAVVTGQTF NFQGEMFEFT QSKHRPDYFS FFTVARREI
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