| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1330 |
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| Symbol | |
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| ID | 8414215 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1496311 |
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| End bp | 1497900 |
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| Gene Length | 1590 bp |
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| Protein Length | 529 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 645022927 |
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| Product | phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase |
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| Protein accession | YP_003180345 |
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| Protein GI | 257785128 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0138] AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) |
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| TIGRFAM ID | [TIGR00355] phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00539756 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000346935 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGCTGAGG CCCCTATCAA ACGTGCGCTA ATTTCGGTAA CAGATAAAAC GGGTATTGTT
GAATTTGCAC AAACTCTTAC TAAAGAGTTT GGTGTTGAAG TAATTTCAAC AGGTGGAACC
GCAAAAACCC TTGAAGAGGC TGGTGTCCCC GTAGTTCCTA TTGAGTCTTA TACCGGATTT
CCAGAAATGA TGGACGGTCG TGTTAAGACG CTGCATCCTC GTGTTCATGG TGGTCTTTTA
TGCCGTAGAG ATAATTCCGG TCATGTCGCA GACGCAGAGA ATAATGGTAT TGGCATGATT
GACCTGGTCT GCGTTAATCT CTATGAGTTT GAGAAGACTG TAGCTGATCC ATCAGTAACT
CTTGAAAATG CAATTGAGCA TATCGATATC GGTGGACCTT CAATGCTCCG CTCTGCTGCA
AAGAATAATG ATTTTGTTAC GGTTGTTGTT GATCCGGCAG ATTATGGTCG TGTTCTTGAT
GAGATGCGTG TCCATGACGG TGCAACTACA AGGGCTTCTC GCCAGCAGCT GGCTTTGAAG
GTATTTAAGA CAACGGCTGC ATACGATGGC GCTATTGCCG CATACCTTTC TGGTGTTGTT
GAAGCAGAGC AAAGTAAATT CCCAGAGACT TTGCTGGTAA AGGCAACAAA GGAGCAAGAT
CTTCGTTACG GAGAAAATCC TCAGCAGTCC GCAGCGTTTT ACAAGATGCC TGGCGCTCCT
GCACACTCCC TAGCAAATGC TCAGCAACTT CAGGGTAAGC CTTTGTCTTA CAACAATTTG
TTGGATACCG ATGCAGCTTG GGCGGCTGTT CGTGAGTTTG ATGATCCATC AGTCATTATT
TTGAAGCATC AGAATCCTTG TGGTTCTGCA ACAGCAGAAA ATGTTATTGA GGCATATGAC
CGGGCATTTG CTTGTGATCC TCTTTCTGCA TTTGGTGGAA TTATTGCAGT GAACAGAGAA
GTTCCACTGG AGTTTGTGGA GCATTTTGCA GATATCAATA AGCAGTTTGT TGAGGTTCTT
ATTGCATCAA GTTTCACGGA AGAGGCTCTT GAGCGACTGT CAAAGAGAAC AAATCTTCGC
GTATTAGCTA CGGGCGGAAT CGATAGAAGT CGTGAGCTCG AAATGAGAAC TGTTGATGGT
GGTCTTTTAG TGCAAGACCT TGATCATGCT GATGAAACTG CGGATAGCTT TGAGGTTGTC
ACAAAGCGTC AACCAACTTC AGAAGAGTTG TCTGATTTGG TATTTGCTTG GAAGGTCTGT
AAGACCGTTA AGTCTAATGC AATTCTGGTC GCAAAAGATC AGGCTGGAAT TGGTATGGGA
CCAGGTCAGC CCAACCGTGT TGATGCTGCT CTTCTCGCAT GTGAGCGTGC TGAAGCAGCT
TGCGAGCGTA TGGGAATTGA TTCAAAGAAC CTTGTGGCTG CATCTGACGC ATTCTTCCCA
TTCCGAGATA ACGTTGACAC GCTGGCAGCT CATGGCGTAA CAGCTATTAT TCAGCCAGGT
GGATCAGTTA GAGACGATGA ATCCATTGCT GCTTGTGATG AATATGGTAT TGCAATGGTG
TTTACGGGAA AGCGACACTT TAGGCACTAA
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| Protein sequence | MAEAPIKRAL ISVTDKTGIV EFAQTLTKEF GVEVISTGGT AKTLEEAGVP VVPIESYTGF
PEMMDGRVKT LHPRVHGGLL CRRDNSGHVA DAENNGIGMI DLVCVNLYEF EKTVADPSVT
LENAIEHIDI GGPSMLRSAA KNNDFVTVVV DPADYGRVLD EMRVHDGATT RASRQQLALK
VFKTTAAYDG AIAAYLSGVV EAEQSKFPET LLVKATKEQD LRYGENPQQS AAFYKMPGAP
AHSLANAQQL QGKPLSYNNL LDTDAAWAAV REFDDPSVII LKHQNPCGSA TAENVIEAYD
RAFACDPLSA FGGIIAVNRE VPLEFVEHFA DINKQFVEVL IASSFTEEAL ERLSKRTNLR
VLATGGIDRS RELEMRTVDG GLLVQDLDHA DETADSFEVV TKRQPTSEEL SDLVFAWKVC
KTVKSNAILV AKDQAGIGMG PGQPNRVDAA LLACERAEAA CERMGIDSKN LVAASDAFFP
FRDNVDTLAA HGVTAIIQPG GSVRDDESIA ACDEYGIAMV FTGKRHFRH
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