| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1218 |
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| Symbol | |
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| ID | 8414097 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 1363950 |
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| End bp | 1365503 |
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| Gene Length | 1554 bp |
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| Protein Length | 517 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 645022812 |
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| Product | UDP-N-acetylmuramyl-tripeptide synthetase |
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| Protein accession | YP_003180236 |
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| Protein GI | 257785019 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0769] UDP-N-acetylmuramyl tripeptide synthase |
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| TIGRFAM ID | [TIGR01085] UDP-N-acetylmuramyl-tripeptide synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000328794 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.498702 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATTAC ACGAGCTCCT GGCGCTCTTT ACCAGCAAGA ACATCGAGTA CACTACCGCC
CATTTTGATG CGGTTGATCA AAACGCACAG CTTACCGATG TTGCAAGCGA TTCTCGTGAG
GTCATCCCCG GTTCGCTGTT TGTTTGCAAG GGCGCGAGTT TCTCGCCAGC GTATCTGACA
AGCGCGGTAA AGGCTGGAGC TGTTGCGTAC CTTTGCCAGC GGTCACTTGC AGAAGAACTG
CAGGCAGTAG CGCCAAACGT AGCTGCCATT CACGTGGATG ACGTGCGCTT TGCCATGGCC
TATGTGGCCG CAGGCGTTGC GGGACATCCC GACAAGAAGC TCACTACCAT CGGTATTACG
GGTACAAAGG GCAAGTCTAC CTGCTCGTAT ATGCTGCGCG CCATCCTTGA CGGCGACGAG
CCGTACTCCA AGTGCGGCGT GATCGGCGGC ATCGAGGTAT TTGACGGCAA GGACACGCAG
CCCGCGCACA ACACCACACC CGAGGCTCCT GAGCTGTGGC GCCACCTCAA GCACGCCGCG
GAGGCCGGCC TCCCCTACGT TGACATGGAG ATTTCCAGCC AGGGACTCAA GTACGACCGC
ACAGTTGACC TCAACCTGAG TGTTGCGGTG TTCCTAAACA TTGGAACCGA TCATATTTCC
CCTGTTGAAC ACCCTACTTT TGAAGATTAC TTTGAGAGCA AGCTGAAGAT TTTTGACCTT
GCTCGCGTGG CTGTTGTCAA CAAGAACACT ATGATGTTTG ACCAGGTCAT GGAGCGTGCA
CAGAGGTGCG AGAAGGTCCT GACCTTCTCC ACAACCGATT CCGACGCCAC CGTTTGGGCG
GACGAGATCA CCCCTCACCA GGGCATGGTT ACCTTTACCG TGCACACGCC AACCTGGACC
AGCAGCGCCG CACTGCCTAT GTCCGGTCTC TTCAACGTGG AGAACGCTCT TGCGGCAATC
ACCGTTGCTG ACTACCTGGG CATTCGCGAG AAGGACGCTG TGCTTCCGCT GATGAACGTT
AAGGTGCCAG GCCGCATGGA GCTGCTGAGC TCGCCCGACA ACAAGGTCAC GGGCTTGGTC
GACTACGCTC ACAACAAACT TTCCTATCAG AAGCTTTTCT CGTCAACTGC TAAGGAATTC
CCTGGTTATG GCCGCTATGT GGTCATGGGA GCCGTTGGCG GCAAGGCGTA CAACCGTCGT
CAGGAGCTGC CAGAAGAGGC CGCCAAGTGG GCGGATCTGA TGATTTACAC CACCGAGGAC
TGCAACATGG AAGATCCTGC GGTGATTTGC GCACAAATGG CCGAAGCCAC GCCCGAGGGC
GCCGCGCACA AGATTATCCT TGACCGCTAC GACGCCATTT ACGAGGCGGT TTCCGCTGCT
TACGACGACC CTCGTCCGTC GCTGGTGTAC CTGCTTGCCA AGGGCGACGA GCCGTTCAAC
ATTATCGGCG GCAAGCACGT TCCGTGGATG ACGGACGCTG CTGCGTTCAA GGCTGCCGTT
CGTGCCAAGC TGGACAAACG AACCGGTCGC GCGGGACGCG ATAACCGCAG TTAA
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| Protein sequence | MTLHELLALF TSKNIEYTTA HFDAVDQNAQ LTDVASDSRE VIPGSLFVCK GASFSPAYLT
SAVKAGAVAY LCQRSLAEEL QAVAPNVAAI HVDDVRFAMA YVAAGVAGHP DKKLTTIGIT
GTKGKSTCSY MLRAILDGDE PYSKCGVIGG IEVFDGKDTQ PAHNTTPEAP ELWRHLKHAA
EAGLPYVDME ISSQGLKYDR TVDLNLSVAV FLNIGTDHIS PVEHPTFEDY FESKLKIFDL
ARVAVVNKNT MMFDQVMERA QRCEKVLTFS TTDSDATVWA DEITPHQGMV TFTVHTPTWT
SSAALPMSGL FNVENALAAI TVADYLGIRE KDAVLPLMNV KVPGRMELLS SPDNKVTGLV
DYAHNKLSYQ KLFSSTAKEF PGYGRYVVMG AVGGKAYNRR QELPEEAAKW ADLMIYTTED
CNMEDPAVIC AQMAEATPEG AAHKIILDRY DAIYEAVSAA YDDPRPSLVY LLAKGDEPFN
IIGGKHVPWM TDAAAFKAAV RAKLDKRTGR AGRDNRS
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